Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1157c

Experiment: 7H9 with nitrate 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrate 4 mM
1,282,140	+				-0.8
1,282,141	-				-0.4
1,282,141	-				-0.4
1,282,141	-				+2.3
1,282,141	-				+0.0
1,282,294	+				-1.3
1,282,294	+				-0.5
1,282,294	+				-0.5
1,282,295	-				-1.2
1,282,295	-				+0.1
1,282,295	-				-2.5
1,282,527	+		Rv1156	0.38	-1.1
1,282,528	-		Rv1156	0.38	-1.4
1,282,530	-		Rv1156	0.38	-1.1
1,282,786	+		Rv1156	0.82	-0.5
1,282,786	+		Rv1156	0.82	-2.6
1,282,787	-		Rv1156	0.82	-3.2
1,282,787	-		Rv1156	0.82	-0.1
1,282,787	-		Rv1156	0.82	-1.7
1,282,787	-		Rv1156	0.82	-0.7
1,282,787	-		Rv1156	0.82	-0.4
1,282,791	-		Rv1156	0.82	-0.9
1,282,791	-		Rv1156	0.82	-0.9
1,283,017	+				-0.5
1,283,031	+				-0.5
1,283,057	+				-0.3
1,283,058	-				-0.4
1,284,426	-		Rv1158c	0.36	+0.6
1,284,510	-		Rv1158c	0.48	-0.2
1,284,551	+		Rv1158c	0.54	-0.1
1,284,800	+				+1.9
1,284,801	-				-1.7
1,284,801	-				-0.5
1,284,943	-				-0.4
1,284,943	-				-2.6
1,284,953	+				-2.9
1,285,050	+				-1.0
1,285,050	+				-0.7
1,285,050	+				+1.4