Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1084

Experiment: 7H9 with nitrate 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrate 4 mM
1,206,789	-		Rv1082	0.31	-0.9
1,206,792	+		Rv1082	0.31	-1.0
1,206,793	-		Rv1082	0.31	-0.2
1,206,803	+		Rv1082	0.33	-0.6
1,206,910	+		Rv1082	0.45	-0.8
1,207,042	+		Rv1082	0.60	-1.9
1,207,042	+		Rv1082	0.60	-0.5
1,207,045	+		Rv1082	0.61	+0.6
1,207,046	-		Rv1082	0.61	+0.9
1,207,335	+				+0.3
1,207,648	-				+0.2
1,207,691	-				+0.0
1,207,710	+				+0.3
1,207,927	+		Rv1084	0.14	-1.1
1,207,928	-		Rv1084	0.14	-0.1
1,207,928	-		Rv1084	0.14	-1.6
1,208,021	-		Rv1084	0.19	+1.9
1,208,282	+		Rv1084	0.32	-0.6
1,208,294	-		Rv1084	0.33	-1.7
1,208,369	-		Rv1084	0.36	-1.5
1,208,369	-		Rv1084	0.36	-0.2
1,208,446	+		Rv1084	0.40	-1.3
1,208,630	-		Rv1084	0.49	-0.4
1,208,630	-		Rv1084	0.49	+0.0
1,209,073	+		Rv1084	0.71	-0.5
1,209,577	+				-1.0
1,209,577	+				-0.9
1,209,577	+				-0.5
1,209,578	-				-0.3
1,209,581	+				-0.7
1,209,867	+		Rv1085c	0.15	-2.0
1,209,874	+		Rv1085c	0.16	-2.9
1,209,875	-		Rv1085c	0.16	+1.9
1,209,964	+		Rv1085c	0.29	-1.8
1,209,994	+		Rv1085c	0.33	-2.3
1,209,995	-		Rv1085c	0.33	-2.0
1,210,133	-		Rv1085c	0.52	-1.3
1,210,133	-		Rv1085c	0.52	-1.0
1,210,133	-		Rv1085c	0.52	-2.4
1,210,222	+		Rv1085c	0.64	-1.6
1,210,264	+		Rv1085c	0.70	-0.2
1,210,358	-		Rv1085c	0.83	+0.0
1,210,535	+				-1.3
1,210,581	+				-0.9
1,210,581	+				-2.6
1,210,581	+				-1.7
1,210,582	-				-4.2
1,210,640	+				-0.4