Experiment: 7H9 with nitrate 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0402c and Rv0403c overlap by 4 nucleotides Rv0403c and Rv0404 are separated by 320 nucleotides
Rv0402c: Rv0402c - Probable conserved transmembrane transport protein MmpL1, at 480,355 to 483,231
Rv0402c
Rv0403c: Rv0403c - Probable conserved membrane protein MmpS1, at 483,228 to 483,656
Rv0403c
Rv0404: Rv0404 - Fatty-acid-AMP ligase FadD30 (fatty-acid-AMP synthetase) (fatty-acid-AMP synthase), at 483,977 to 485,734
Rv0404
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.301 kb on - strand, within Rv0402c at 482.366 kb on + strand, within Rv0402c at 482.436 kb on - strand, within Rv0402c at 482.487 kb on + strand, within Rv0402c at 482.488 kb on - strand, within Rv0402c at 482.597 kb on + strand, within Rv0402c at 482.671 kb on + strand, within Rv0402c at 482.672 kb on - strand, within Rv0402c at 482.711 kb on + strand, within Rv0402c at 482.711 kb on + strand, within Rv0402c at 482.822 kb on + strand, within Rv0402c at 482.823 kb on - strand, within Rv0402c at 482.823 kb on - strand, within Rv0402c at 482.939 kb on + strand, within Rv0402c at 483.073 kb on + strand at 483.135 kb on + strand at 483.387 kb on - strand, within Rv0403c at 483.387 kb on - strand, within Rv0403c at 483.446 kb on - strand, within Rv0403c at 483.488 kb on - strand, within Rv0403c at 483.615 kb on + strand at 483.615 kb on + strand at 483.616 kb on - strand at 483.616 kb on - strand at 483.616 kb on - strand at 483.815 kb on + strand at 483.987 kb on + strand at 484.199 kb on + strand, within Rv0404 at 484.199 kb on + strand, within Rv0404 at 484.300 kb on - strand, within Rv0404 at 484.386 kb on + strand, within Rv0404 at 484.387 kb on - strand, within Rv0404 at 484.391 kb on - strand, within Rv0404 at 484.411 kb on + strand, within Rv0404 at 484.634 kb on + strand, within Rv0404
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrate 4 mM remove 482,301 - Rv0402c 0.68 -0.0 482,366 + Rv0402c 0.70 +0.1 482,436 - Rv0402c 0.72 -0.2 482,487 + Rv0402c 0.74 +2.3 482,488 - Rv0402c 0.74 +0.3 482,597 + Rv0402c 0.78 -1.8 482,671 + Rv0402c 0.81 -0.3 482,672 - Rv0402c 0.81 +0.1 482,711 + Rv0402c 0.82 +0.1 482,711 + Rv0402c 0.82 -2.0 482,822 + Rv0402c 0.86 -0.3 482,823 - Rv0402c 0.86 -0.2 482,823 - Rv0402c 0.86 +0.3 482,939 + Rv0402c 0.90 +0.1 483,073 + +0.9 483,135 + +0.4 483,387 - Rv0403c 0.37 -0.0 483,387 - Rv0403c 0.37 -0.3 483,446 - Rv0403c 0.51 -0.8 483,488 - Rv0403c 0.61 -0.2 483,615 + +1.3 483,615 + +0.2 483,616 - +2.7 483,616 - -0.7 483,616 - -0.2 483,815 + +1.4 483,987 + -0.4 484,199 + Rv0404 0.13 -0.9 484,199 + Rv0404 0.13 +0.1 484,300 - Rv0404 0.18 -1.6 484,386 + Rv0404 0.23 -0.6 484,387 - Rv0404 0.23 +0.1 484,391 - Rv0404 0.24 +1.9 484,411 + Rv0404 0.25 -0.5 484,634 + Rv0404 0.37 -0.2
Or see this region's nucleotide sequence