Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3417c

Experiment: 7H9 with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 5 mM
3,834,296	+		Rv3415c	0.73	+0.6
3,834,296	+		Rv3415c	0.73	-0.7
3,834,296	+		Rv3415c	0.73	+0.1
3,834,296	+		Rv3415c	0.73	-1.9
3,834,296	+		Rv3415c	0.73	+0.6
3,834,296	+		Rv3415c	0.73	+2.5
3,834,296	+		Rv3415c	0.73	+0.2
3,834,296	+		Rv3415c	0.73	+0.9
3,834,361	+		Rv3415c	0.81	-1.2
3,834,438	+		Rv3415c	0.90	-0.4
3,834,649	+				+0.2
3,834,785	-				+0.7
3,835,148	+		Rv3416	0.83	-1.2
3,835,148	+		Rv3416	0.83	-1.0
3,835,148	+		Rv3416	0.83	-1.0
3,835,198	+				-0.9
3,835,199	-				-1.9
3,835,392	-				-1.1
3,835,392	-				-0.5
3,835,438	+		Rv3417c	0.10	-0.6
3,835,439	-		Rv3417c	0.10	-1.6
3,835,477	-		Rv3417c	0.13	+0.1
3,836,043	-		Rv3417c	0.48	-0.2
3,836,059	+		Rv3417c	0.49	-0.2
3,836,290	+		Rv3417c	0.63	-2.4
3,836,291	-		Rv3417c	0.63	-1.3
3,836,873	-				-0.0