Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3226c

Experiment: 7H9 with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 5 mM
3,601,685	+		Rv3225c	0.47	+0.2
3,601,710	+		Rv3225c	0.49	+0.5
3,601,789	-		Rv3225c	0.54	-0.1
3,601,832	+		Rv3225c	0.57	+0.2
3,601,832	+		Rv3225c	0.57	+2.1
3,601,922	+		Rv3225c	0.64	-0.2
3,601,936	-		Rv3225c	0.65	+0.1
3,602,074	-		Rv3225c	0.74	+0.2
3,602,204	+		Rv3225c	0.83	-0.4
3,602,205	-		Rv3225c	0.83	-0.3
3,602,283	+		Rv3225c	0.89	-0.5
3,602,284	-		Rv3225c	0.89	-3.0
3,602,315	-				+0.2
3,602,334	-				-0.1
3,602,847	+		Rv3226c	0.37	+1.0
3,602,847	+		Rv3226c	0.37	-1.7
3,602,848	-		Rv3226c	0.37	-0.6
3,602,848	-		Rv3226c	0.37	-1.0
3,603,043	+		Rv3226c	0.63	-0.6
3,603,223	-		Rv3226c	0.87	+0.1
3,603,223	-		Rv3226c	0.87	+1.0
3,603,330	-				+0.3
3,603,330	-				+0.1
3,603,330	-				+0.1