Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3069

Experiment: 7H9 with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 5 mM
3,432,870	+		Rv3068c	0.54	-1.4
3,432,871	-		Rv3068c	0.54	+0.1
3,432,997	+		Rv3068c	0.62	-0.1
3,432,997	+		Rv3068c	0.62	-0.1
3,432,998	-		Rv3068c	0.62	-0.6
3,433,009	+		Rv3068c	0.63	-1.6
3,433,150	+		Rv3068c	0.71	+0.8
3,433,150	+		Rv3068c	0.71	-0.1
3,433,235	-		Rv3068c	0.76	-1.5
3,433,235	-		Rv3068c	0.76	-1.0
3,433,274	-		Rv3068c	0.79	-0.8
3,433,321	-		Rv3068c	0.82	-0.5
3,433,321	-		Rv3068c	0.82	+0.7
3,433,412	-		Rv3068c	0.87	-0.5
3,433,412	-		Rv3068c	0.87	+1.7
3,433,442	+		Rv3068c	0.89	+0.3
3,433,442	+		Rv3068c	0.89	-0.7
3,433,443	-		Rv3068c	0.89	+0.3
3,433,443	-		Rv3068c	0.89	+0.1
3,433,446	+		Rv3068c	0.89	+0.0
3,433,546	+				-0.5
3,433,547	-				+0.6
3,433,668	+				+0.9
3,433,669	-				-0.6
3,433,669	-				-1.0
3,433,669	-				-0.7
3,433,852	-		Rv3069	0.40	+0.3
3,433,894	-		Rv3069	0.51	+1.3
3,434,081	-				+1.6
3,434,295	+		Rv3070	0.55	-0.1
3,434,350	-		Rv3070	0.69	-0.3
3,434,350	-		Rv3070	0.69	-0.0
3,434,350	-		Rv3070	0.69	-0.4
3,434,401	+		Rv3070	0.82	-0.3
3,434,896	+		Rv3071	0.39	+0.2
3,434,896	+		Rv3071	0.39	-0.4
3,434,896	+		Rv3071	0.39	-1.0
3,434,897	-		Rv3071	0.39	+0.5