Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2671

Experiment: 7H9 with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 5 mM
2,985,990	+		Rv2670c	0.23	+0.4
2,986,347	-		Rv2670c	0.55	-0.2
2,986,375	+		Rv2670c	0.58	+0.3
2,986,479	+		Rv2670c	0.67	-1.1
2,986,479	+		Rv2670c	0.67	+0.6
2,986,480	-		Rv2670c	0.67	-0.1
2,986,902	+				-4.2
2,986,903	-				-5.6
2,986,933	-		Rv2671	0.12	-1.5
2,987,115	+		Rv2671	0.36	-2.2
2,987,115	+		Rv2671	0.36	-2.3
2,987,411	+		Rv2671	0.74	+0.1
2,987,491	-		Rv2671	0.84	-2.7
2,987,586	+				-3.6
2,987,592	+				-4.2
2,987,593	-				-4.4
2,987,593	-				-3.2
2,987,601	+				-3.9
2,987,976	+		Rv2672	0.19	+0.4
2,987,976	+		Rv2672	0.19	+0.1
2,987,976	+		Rv2672	0.19	+0.0
2,987,976	+		Rv2672	0.19	+0.3
2,987,976	+		Rv2672	0.19	+0.5
2,988,031	+		Rv2672	0.22	-1.6
2,988,032	-		Rv2672	0.22	-0.3
2,988,100	+		Rv2672	0.26	-0.5