Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2622

Experiment: 7H9 with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 5 mM
2,948,007	+		Rv2621c	0.18	+0.3
2,948,007	+		Rv2621c	0.18	+0.3
2,948,558	+				+0.8
2,948,559	-				-0.8
2,948,635	+				+0.1
2,948,635	+				+1.7
2,948,635	+				-0.3
2,948,635	+				+0.4
2,948,635	+				+0.2
2,948,636	-				-0.4
2,948,873	+		Rv2622	0.29	-1.6
2,948,873	+		Rv2622	0.29	-1.3
2,949,277	-		Rv2622	0.78	-0.5
2,949,485	+				+0.3
2,949,623	-				-0.2
2,949,735	+		Rv2623	0.16	-0.6
2,950,080	+		Rv2623	0.54	+0.9
2,950,081	-		Rv2623	0.55	-0.7
2,950,081	-		Rv2623	0.55	-1.2