Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1663

Experiment: 7H9 with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 5 mM
1,887,416	+		Rv1663	0.60	+0.1
1,887,545	+		Rv1663	0.68	+0.6
1,887,545	+		Rv1663	0.68	-0.6
1,887,549	-		Rv1663	0.69	+0.4
1,887,549	-		Rv1663	0.69	+0.0
1,887,549	-		Rv1663	0.69	-0.6
1,887,549	-		Rv1663	0.69	-0.9
1,887,553	-		Rv1663	0.69	+0.9
1,887,825	-		Rv1663	0.87	-0.2
1,888,608	-		Rv1664	0.19	-0.3
1,888,611	+		Rv1664	0.19	-1.6
1,888,642	+		Rv1664	0.20	+0.7
1,888,851	+		Rv1664	0.27	-0.3
1,888,852	-		Rv1664	0.27	-0.1
1,888,852	-		Rv1664	0.27	+0.8