Experiment: 7H9 with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0800 and Rv0801 are separated by 11 nucleotides Rv0801 and Rv0802c overlap by 7 nucleotides Rv0802c and Rv0803 are separated by 191 nucleotides
Rv0800: Rv0800 - Probable aminopeptidase PepC, at 893,318 to 894,619
Rv0800
Rv0801: Rv0801 - Conserved protein, at 894,631 to 894,978
Rv0801
Rv0802c: Rv0802c - Possible succinyltransferase in the GCN5-related N-acetyltransferase family, at 894,972 to 895,628
Rv0802c
Rv0803: Rv0803 - Phosphoribosylformylglycinamidine synthase II PurL (FGAM synthase II), at 895,820 to 898,084
Rv0803
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1 at 894.023 kb on + strand, within Rv0800 at 894.024 kb on - strand, within Rv0800 at 894.153 kb on + strand, within Rv0800 at 894.350 kb on + strand, within Rv0800 at 894.413 kb on - strand, within Rv0800 at 894.422 kb on + strand, within Rv0800 at 894.606 kb on + strand at 894.618 kb on - strand at 894.644 kb on + strand at 895.083 kb on + strand, within Rv0802c at 895.101 kb on - strand, within Rv0802c at 895.234 kb on + strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.351 kb on - strand, within Rv0802c at 895.431 kb on + strand, within Rv0802c at 895.432 kb on - strand, within Rv0802c at 895.432 kb on - strand, within Rv0802c at 895.715 kb on - strand at 895.715 kb on - strand at 895.718 kb on + strand at 895.765 kb on + strand at 895.769 kb on + strand at 895.769 kb on + strand at 895.769 kb on + strand at 895.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrite 5 mM remove 894,023 + Rv0800 0.54 +0.0 894,024 - Rv0800 0.54 +1.7 894,153 + Rv0800 0.64 +0.8 894,350 + Rv0800 0.79 +1.3 894,413 - Rv0800 0.84 -2.6 894,422 + Rv0800 0.85 -0.1 894,606 + -0.5 894,618 - -2.2 894,644 + -1.3 895,083 + Rv0802c 0.17 -0.6 895,101 - Rv0802c 0.20 +0.6 895,234 + Rv0802c 0.40 -1.1 895,351 - Rv0802c 0.58 -0.2 895,351 - Rv0802c 0.58 +1.0 895,351 - Rv0802c 0.58 -0.8 895,351 - Rv0802c 0.58 -0.5 895,431 + Rv0802c 0.70 -0.8 895,432 - Rv0802c 0.70 -0.0 895,432 - Rv0802c 0.70 -0.8 895,715 - -1.6 895,715 - -0.1 895,718 + -0.4 895,765 + +0.9 895,769 + -0.6 895,769 + +1.7 895,769 + -0.7 895,770 - -0.6
Or see this region's nucleotide sequence