Experiment: 7H9 with nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0780 and Rv0781 overlap by 4 nucleotides Rv0781 and Rv0782 overlap by 212 nucleotides Rv0782 and Rv0783c are separated by 427 nucleotides
Rv0780: Rv0780 - Phosphoribosylaminoimidazole-succinocarboxamide synthase PurC (SAICAR synthetase), at 873,343 to 874,236
Rv0780
Rv0781: Rv0781 - Probable protease II PtrBa [first part] (oligopeptidase B), at 874,233 to 874,943
Rv0781
Rv0782: Rv0782 - Probable protease II PtrBb [second part] (oligopeptidase B), at 874,732 to 876,390
Rv0782
Rv0783c: Rv0783c - Possible multidrug resistance integral membrane efflux protein EmrB, at 876,818 to 878,440
Rv0783c
Position (kb) 874
875
876
877 Strain fitness (log2 ratio) -1
0
1
2
3 at 874.540 kb on + strand, within Rv0781 at 874.713 kb on + strand, within Rv0781 at 875.285 kb on - strand, within Rv0782 at 875.496 kb on + strand, within Rv0782 at 875.546 kb on - strand, within Rv0782 at 875.860 kb on - strand, within Rv0782 at 876.085 kb on + strand, within Rv0782 at 876.320 kb on + strand at 876.325 kb on - strand at 876.419 kb on - strand at 876.462 kb on + strand at 877.269 kb on - strand, within Rv0783c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrite 2.5 mM remove 874,540 + Rv0781 0.43 -0.4 874,713 + Rv0781 0.68 -0.9 875,285 - Rv0782 0.33 -0.7 875,496 + Rv0782 0.46 -1.0 875,546 - Rv0782 0.49 -0.2 875,860 - Rv0782 0.68 -0.4 876,085 + Rv0782 0.82 +2.9 876,320 + +1.6 876,325 - -0.3 876,419 - +0.3 876,462 + -0.1 877,269 - Rv0783c 0.28 +0.9
Or see this region's nucleotide sequence