Experiment: 7H9 with nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0587 and Rv0588 are separated by 1 nucleotides Rv0588 and Rv0589 are separated by 5 nucleotides Rv0589 and Rv0590 overlap by 4 nucleotides Rv0590 and Rv0590A overlap by 52 nucleotides
Rv0587: Rv0587 - Conserved hypothetical integral membrane protein YrbE2A, at 685,129 to 685,926
Rv0587
Rv0588: Rv0588 - Conserved hypothetical integral membrane protein YrbE2B, at 685,928 to 686,815
Rv0588
Rv0589: Rv0589 - Mce-family protein Mce2A, at 686,821 to 688,035
Rv0589
Rv0590: Rv0590 - Mce-family protein Mce2B, at 688,032 to 688,859
Rv0590
Rv0590A: Rv0590A - Mce-family related protein, at 688,808 to 689,062
Rv0590A
Position (kb) 686
687
688
689 Strain fitness (log2 ratio) -2
-1
0
1 at 686.544 kb on - strand, within Rv0588 at 686.573 kb on + strand, within Rv0588 at 686.663 kb on + strand, within Rv0588 at 686.667 kb on - strand, within Rv0588 at 686.673 kb on - strand, within Rv0588 at 686.781 kb on - strand at 686.863 kb on + strand at 686.864 kb on - strand at 686.988 kb on + strand, within Rv0589 at 687.634 kb on + strand, within Rv0589 at 687.688 kb on + strand, within Rv0589 at 687.991 kb on + strand at 687.991 kb on + strand at 688.235 kb on - strand, within Rv0590 at 688.235 kb on - strand, within Rv0590 at 688.937 kb on + strand, within Rv0590A at 688.938 kb on - strand, within Rv0590A at 689.011 kb on - strand, within Rv0590A
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrite 2.5 mM remove 686,544 - Rv0588 0.69 -0.3 686,573 + Rv0588 0.73 +0.2 686,663 + Rv0588 0.83 -0.9 686,667 - Rv0588 0.83 -0.7 686,673 - Rv0588 0.84 -0.6 686,781 - -1.7 686,863 + +1.1 686,864 - -0.4 686,988 + Rv0589 0.14 -0.2 687,634 + Rv0589 0.67 +0.0 687,688 + Rv0589 0.71 -0.4 687,991 + +0.2 687,991 + -2.0 688,235 - Rv0590 0.25 -2.6 688,235 - Rv0590 0.25 -0.5 688,937 + Rv0590A 0.51 +0.1 688,938 - Rv0590A 0.51 -0.5 689,011 - Rv0590A 0.80 -0.4
Or see this region's nucleotide sequence