Experiment: 7H9 with copper (II) chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0611c and Rv0612 overlap by 21 nucleotides Rv0612 and Rv0613c are separated by 18 nucleotides Rv0613c and Rv0614 overlap by 160 nucleotides Rv0614 and Rv0615 overlap by 4 nucleotides
Rv0611c: Rv0611c - Hypothetical protein, at 705,961 to 706,344
Rv0611c
Rv0612: Rv0612 - Conserved hypothetical protein, at 706,324 to 706,929
Rv0612
Rv0613c: Rv0613c - Unknown protein, at 706,948 to 709,515
Rv0613c
Rv0614: Rv0614 - Conserved hypothetical protein, at 709,356 to 710,348
Rv0614
Rv0615: Rv0615 - Probable integral membrane protein, at 710,345 to 710,587
Rv0615
Position (kb) 706
707
708
709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 705.963 kb on - strand at 705.963 kb on - strand at 706.063 kb on - strand, within Rv0611c at 706.153 kb on + strand, within Rv0611c at 706.153 kb on + strand, within Rv0611c at 706.178 kb on + strand, within Rv0611c at 706.178 kb on + strand, within Rv0611c at 706.178 kb on + strand, within Rv0611c at 706.179 kb on - strand, within Rv0611c at 706.179 kb on - strand, within Rv0611c at 706.195 kb on - strand, within Rv0611c at 706.195 kb on - strand, within Rv0611c at 706.255 kb on + strand, within Rv0611c at 706.639 kb on + strand, within Rv0612 at 706.640 kb on - strand, within Rv0612 at 706.810 kb on + strand, within Rv0612 at 706.811 kb on - strand, within Rv0612 at 706.949 kb on + strand at 706.950 kb on - strand at 706.950 kb on - strand at 706.950 kb on - strand at 707.127 kb on - strand at 707.447 kb on + strand, within Rv0613c at 707.447 kb on + strand, within Rv0613c at 707.771 kb on - strand, within Rv0613c at 707.771 kb on - strand, within Rv0613c at 708.012 kb on - strand, within Rv0613c at 708.074 kb on + strand, within Rv0613c at 708.074 kb on + strand, within Rv0613c at 708.074 kb on + strand, within Rv0613c at 708.074 kb on + strand, within Rv0613c at 708.075 kb on - strand, within Rv0613c at 708.134 kb on + strand, within Rv0613c at 708.705 kb on - strand, within Rv0613c at 708.705 kb on - strand, within Rv0613c at 708.805 kb on + strand, within Rv0613c at 709.202 kb on + strand, within Rv0613c at 709.300 kb on + strand at 709.301 kb on - strand at 709.527 kb on + strand, within Rv0614 at 709.527 kb on + strand, within Rv0614 at 709.527 kb on + strand, within Rv0614 at 709.527 kb on + strand, within Rv0614 at 709.528 kb on - strand, within Rv0614 at 709.750 kb on + strand, within Rv0614 at 709.751 kb on - strand, within Rv0614 at 709.991 kb on + strand, within Rv0614 at 710.028 kb on - strand, within Rv0614 at 710.071 kb on + strand, within Rv0614 at 710.072 kb on - strand, within Rv0614 at 710.157 kb on + strand, within Rv0614 at 710.323 kb on + strand at 710.323 kb on + strand at 710.355 kb on + strand at 710.355 kb on + strand at 710.435 kb on + strand, within Rv0615 at 710.436 kb on - strand, within Rv0615
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with copper (II) chloride 0.08 mM remove 705,963 - -1.3 705,963 - -0.0 706,063 - Rv0611c 0.27 -0.8 706,153 + Rv0611c 0.50 +0.1 706,153 + Rv0611c 0.50 -0.8 706,178 + Rv0611c 0.57 -0.4 706,178 + Rv0611c 0.57 -0.4 706,178 + Rv0611c 0.57 +0.3 706,179 - Rv0611c 0.57 -1.8 706,179 - Rv0611c 0.57 -1.1 706,195 - Rv0611c 0.61 +0.5 706,195 - Rv0611c 0.61 -1.0 706,255 + Rv0611c 0.77 -0.4 706,639 + Rv0612 0.52 +0.6 706,640 - Rv0612 0.52 -0.1 706,810 + Rv0612 0.80 +2.6 706,811 - Rv0612 0.80 +1.6 706,949 + +0.1 706,950 - +0.0 706,950 - -0.1 706,950 - -0.3 707,127 - -0.3 707,447 + Rv0613c 0.19 -2.3 707,447 + Rv0613c 0.19 -0.1 707,771 - Rv0613c 0.32 -0.2 707,771 - Rv0613c 0.32 +0.6 708,012 - Rv0613c 0.41 +0.9 708,074 + Rv0613c 0.44 -0.5 708,074 + Rv0613c 0.44 -0.7 708,074 + Rv0613c 0.44 -3.1 708,074 + Rv0613c 0.44 -1.6 708,075 - Rv0613c 0.44 -1.5 708,134 + Rv0613c 0.46 -1.5 708,705 - Rv0613c 0.68 -1.1 708,705 - Rv0613c 0.68 +0.6 708,805 + Rv0613c 0.72 +1.6 709,202 + Rv0613c 0.88 +0.3 709,300 + -2.1 709,301 - +0.1 709,527 + Rv0614 0.17 -0.7 709,527 + Rv0614 0.17 +0.3 709,527 + Rv0614 0.17 -1.9 709,527 + Rv0614 0.17 -0.0 709,528 - Rv0614 0.17 -1.5 709,750 + Rv0614 0.40 -2.7 709,751 - Rv0614 0.40 -2.0 709,991 + Rv0614 0.64 +1.1 710,028 - Rv0614 0.68 +1.6 710,071 + Rv0614 0.72 +1.6 710,072 - Rv0614 0.72 +0.1 710,157 + Rv0614 0.81 -0.2 710,323 + -1.7 710,323 + -0.5 710,355 + -0.3 710,355 + -0.0 710,435 + Rv0615 0.37 -1.5 710,436 - Rv0615 0.37 +1.1
Or see this region's nucleotide sequence