Experiment: 7H9 with copper (II) chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0171 and Rv0172 overlap by 4 nucleotides Rv0172 and Rv0173 overlap by 4 nucleotides
Rv0171: Rv0171 - Mce-family protein Mce1C, at 200,932 to 202,479
Rv0171
Rv0172: Rv0172 - Mce-family protein Mce1D, at 202,476 to 204,068
Rv0172
Rv0173: Rv0173 - Possible Mce-family lipoprotein LprK (Mce-family lipoprotein Mce1E), at 204,065 to 205,237
Rv0173
Position (kb) 202
203
204
205 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 201.518 kb on + strand, within Rv0171 at 201.521 kb on + strand, within Rv0171 at 201.522 kb on - strand, within Rv0171 at 201.581 kb on + strand, within Rv0171 at 201.594 kb on + strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.839 kb on - strand, within Rv0171 at 201.919 kb on - strand, within Rv0171 at 201.961 kb on + strand, within Rv0171 at 201.961 kb on + strand, within Rv0171 at 201.962 kb on - strand, within Rv0171 at 202.494 kb on - strand at 202.676 kb on + strand, within Rv0172 at 202.677 kb on - strand, within Rv0172 at 202.677 kb on - strand, within Rv0172 at 202.758 kb on + strand, within Rv0172 at 202.758 kb on + strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.839 kb on + strand, within Rv0172 at 202.839 kb on + strand, within Rv0172 at 202.937 kb on + strand, within Rv0172 at 203.031 kb on - strand, within Rv0172 at 203.114 kb on - strand, within Rv0172 at 203.143 kb on + strand, within Rv0172 at 203.319 kb on - strand, within Rv0172 at 203.424 kb on + strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.689 kb on - strand, within Rv0172 at 203.726 kb on + strand, within Rv0172 at 203.910 kb on + strand at 203.911 kb on - strand at 203.966 kb on - strand at 203.993 kb on - strand at 203.993 kb on - strand at 204.218 kb on + strand, within Rv0173 at 204.227 kb on + strand, within Rv0173 at 204.228 kb on - strand, within Rv0173 at 204.691 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.774 kb on + strand, within Rv0173 at 204.838 kb on - strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.951 kb on - strand, within Rv0173 at 205.028 kb on + strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with copper (II) chloride 0.08 mM remove 201,518 + Rv0171 0.38 -1.0 201,521 + Rv0171 0.38 -1.3 201,522 - Rv0171 0.38 -0.7 201,581 + Rv0171 0.42 -2.7 201,594 + Rv0171 0.43 +0.6 201,595 - Rv0171 0.43 -0.9 201,595 - Rv0171 0.43 -1.0 201,839 - Rv0171 0.59 +0.7 201,919 - Rv0171 0.64 +0.7 201,961 + Rv0171 0.66 -0.8 201,961 + Rv0171 0.66 +0.4 201,962 - Rv0171 0.67 +0.3 202,494 - +0.3 202,676 + Rv0172 0.13 -0.7 202,677 - Rv0172 0.13 -0.4 202,677 - Rv0172 0.13 -1.3 202,758 + Rv0172 0.18 +1.7 202,758 + Rv0172 0.18 -2.1 202,759 - Rv0172 0.18 -2.0 202,759 - Rv0172 0.18 -1.7 202,759 - Rv0172 0.18 -1.3 202,759 - Rv0172 0.18 -1.1 202,839 + Rv0172 0.23 -4.4 202,839 + Rv0172 0.23 -0.3 202,937 + Rv0172 0.29 -2.2 203,031 - Rv0172 0.35 +0.1 203,114 - Rv0172 0.40 +0.0 203,143 + Rv0172 0.42 -0.2 203,319 - Rv0172 0.53 +0.7 203,424 + Rv0172 0.60 -1.2 203,425 - Rv0172 0.60 -1.9 203,425 - Rv0172 0.60 +0.5 203,425 - Rv0172 0.60 -0.9 203,689 - Rv0172 0.76 +1.7 203,726 + Rv0172 0.78 -0.5 203,910 + -0.5 203,911 - +0.9 203,966 - -0.8 203,993 - -0.7 203,993 - -0.3 204,218 + Rv0173 0.13 -2.6 204,227 + Rv0173 0.14 +0.1 204,228 - Rv0173 0.14 +1.7 204,691 + Rv0173 0.53 +0.1 204,728 + Rv0173 0.57 -1.3 204,728 + Rv0173 0.57 +0.4 204,728 + Rv0173 0.57 -1.2 204,728 + Rv0173 0.57 -1.0 204,774 + Rv0173 0.60 -2.6 204,838 - Rv0173 0.66 -1.1 204,950 + Rv0173 0.75 -2.2 204,950 + Rv0173 0.75 +0.5 204,951 - Rv0173 0.76 +0.6 205,028 + Rv0173 0.82 +2.3 205,029 - Rv0173 0.82 -0.6 205,029 - Rv0173 0.82 -1.3 205,062 - Rv0173 0.85 -0.1 205,062 - Rv0173 0.85 -0.7
Or see this region's nucleotide sequence