Experiment: 7H9 with copper (II) chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0147 and Rv0148 are separated by 74 nucleotides Rv0148 and Rv0149 are separated by 6 nucleotides Rv0149 and Rv0150c overlap by 4 nucleotides
Rv0147: Rv0147 - Probable aldehyde dehydrogenase (NAD+) dependent, at 173,238 to 174,758
Rv0147
Rv0148: Rv0148 - Probable short-chain type dehydrogenase/reductase, at 174,833 to 175,693
Rv0148
Rv0149: Rv0149 - Possible quinone oxidoreductase (NADPH:quinone oxidoreductase) (zeta-crystallin), at 175,700 to 176,668
Rv0149
Rv0150c: Rv0150c - Conserved hypothetical protein, at 176,665 to 176,952
Rv0150c
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.833 kb on - strand, within Rv0147 at 173.838 kb on + strand, within Rv0147 at 173.839 kb on - strand, within Rv0147 at 173.958 kb on + strand, within Rv0147 at 173.958 kb on + strand, within Rv0147 at 173.959 kb on - strand, within Rv0147 at 174.043 kb on + strand, within Rv0147 at 174.043 kb on + strand, within Rv0147 at 174.043 kb on + strand, within Rv0147 at 174.044 kb on - strand, within Rv0147 at 174.044 kb on - strand, within Rv0147 at 174.044 kb on - strand, within Rv0147 at 174.115 kb on - strand, within Rv0147 at 174.115 kb on - strand, within Rv0147 at 174.488 kb on + strand, within Rv0147 at 174.489 kb on - strand, within Rv0147 at 174.659 kb on + strand at 174.660 kb on - strand at 174.798 kb on + strand at 174.798 kb on + strand at 174.799 kb on - strand at 174.799 kb on - strand at 174.896 kb on + strand at 175.192 kb on + strand, within Rv0148 at 175.205 kb on + strand, within Rv0148 at 175.214 kb on + strand, within Rv0148 at 175.224 kb on + strand, within Rv0148 at 175.225 kb on - strand, within Rv0148 at 175.246 kb on - strand, within Rv0148 at 175.322 kb on + strand, within Rv0148 at 175.323 kb on - strand, within Rv0148 at 175.323 kb on - strand, within Rv0148 at 175.323 kb on - strand, within Rv0148 at 175.323 kb on - strand, within Rv0148 at 175.323 kb on - strand, within Rv0148 at 175.323 kb on - strand, within Rv0148 at 175.386 kb on - strand, within Rv0148 at 175.386 kb on - strand, within Rv0148 at 175.386 kb on - strand, within Rv0148 at 175.502 kb on + strand, within Rv0148 at 175.502 kb on + strand, within Rv0148 at 175.620 kb on + strand at 175.621 kb on - strand at 175.692 kb on - strand at 175.697 kb on + strand at 175.717 kb on - strand at 175.748 kb on + strand at 175.767 kb on + strand at 175.850 kb on + strand, within Rv0149 at 175.850 kb on + strand, within Rv0149 at 175.851 kb on - strand, within Rv0149 at 176.066 kb on + strand, within Rv0149 at 176.067 kb on - strand, within Rv0149 at 176.078 kb on + strand, within Rv0149 at 176.078 kb on + strand, within Rv0149 at 176.078 kb on + strand, within Rv0149 at 176.235 kb on - strand, within Rv0149 at 176.235 kb on - strand, within Rv0149 at 176.309 kb on + strand, within Rv0149 at 176.309 kb on + strand, within Rv0149 at 176.310 kb on - strand, within Rv0149 at 176.310 kb on - strand, within Rv0149 at 176.397 kb on + strand, within Rv0149 at 176.398 kb on - strand, within Rv0149 at 176.428 kb on - strand, within Rv0149 at 176.428 kb on - strand, within Rv0149 at 176.465 kb on - strand, within Rv0149 at 176.465 kb on - strand, within Rv0149 at 176.465 kb on - strand, within Rv0149 at 176.691 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with copper (II) chloride 0.08 mM remove 173,833 - Rv0147 0.39 -0.0 173,838 + Rv0147 0.39 -0.7 173,839 - Rv0147 0.40 -0.6 173,958 + Rv0147 0.47 -0.4 173,958 + Rv0147 0.47 +1.2 173,959 - Rv0147 0.47 -1.2 174,043 + Rv0147 0.53 -0.6 174,043 + Rv0147 0.53 -1.6 174,043 + Rv0147 0.53 -1.1 174,044 - Rv0147 0.53 -0.7 174,044 - Rv0147 0.53 +0.1 174,044 - Rv0147 0.53 +0.9 174,115 - Rv0147 0.58 -1.7 174,115 - Rv0147 0.58 -0.0 174,488 + Rv0147 0.82 +0.4 174,489 - Rv0147 0.82 -2.0 174,659 + -0.1 174,660 - +1.7 174,798 + +0.3 174,798 + -1.2 174,799 - +1.7 174,799 - -0.7 174,896 + +0.8 175,192 + Rv0148 0.42 -1.0 175,205 + Rv0148 0.43 -1.8 175,214 + Rv0148 0.44 -1.0 175,224 + Rv0148 0.45 -0.7 175,225 - Rv0148 0.46 +2.1 175,246 - Rv0148 0.48 +0.9 175,322 + Rv0148 0.57 +0.0 175,323 - Rv0148 0.57 -0.3 175,323 - Rv0148 0.57 -0.3 175,323 - Rv0148 0.57 -3.3 175,323 - Rv0148 0.57 -0.6 175,323 - Rv0148 0.57 +0.7 175,323 - Rv0148 0.57 -0.8 175,386 - Rv0148 0.64 -1.1 175,386 - Rv0148 0.64 -0.6 175,386 - Rv0148 0.64 +0.5 175,502 + Rv0148 0.78 -1.5 175,502 + Rv0148 0.78 +0.1 175,620 + -0.3 175,621 - +0.1 175,692 - -1.9 175,697 + -0.0 175,717 - -0.4 175,748 + -1.1 175,767 + -0.7 175,850 + Rv0149 0.15 +0.4 175,850 + Rv0149 0.15 +0.1 175,851 - Rv0149 0.16 -1.0 176,066 + Rv0149 0.38 -0.2 176,067 - Rv0149 0.38 +0.7 176,078 + Rv0149 0.39 +1.1 176,078 + Rv0149 0.39 -2.6 176,078 + Rv0149 0.39 -2.3 176,235 - Rv0149 0.55 -0.9 176,235 - Rv0149 0.55 +1.7 176,309 + Rv0149 0.63 -0.4 176,309 + Rv0149 0.63 +1.3 176,310 - Rv0149 0.63 +0.1 176,310 - Rv0149 0.63 -0.3 176,397 + Rv0149 0.72 -1.8 176,398 - Rv0149 0.72 +0.1 176,428 - Rv0149 0.75 +0.3 176,428 - Rv0149 0.75 -0.7 176,465 - Rv0149 0.79 -0.9 176,465 - Rv0149 0.79 +0.3 176,465 - Rv0149 0.79 -2.0 176,691 + +1.0
Or see this region's nucleotide sequence