Experiment: 7H9 with Formaldehyde 0.23 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2750 and Rv2751 are separated by 3 nucleotides Rv2751 and Rv2752c overlap by 14 nucleotides Rv2752c and Rv2753c are separated by 30 nucleotides
Rv2750: Rv2750 - Probable dehydrogenase, at 3,062,816 to 3,063,634
Rv2750
Rv2751: Rv2751 - Conserved protein, at 3,063,638 to 3,064,528
Rv2751
Rv2752c: Rv2752c - Conserved hypothetical protein, at 3,064,515 to 3,066,191
Rv2752c
Rv2753c: Rv2753c - Probable dihydrodipicolinate synthase DapA (DHDPS) (dihydrodipicolinate synthetase), at 3,066,222 to 3,067,124
Rv2753c
Position (kb)
3064
3065
3066
3067 Strain fitness (log2 ratio)
-2
-1
0
1 at 3063.632 kb on + strand at 3063.810 kb on + strand, within Rv2751 at 3063.811 kb on - strand, within Rv2751 at 3064.248 kb on + strand, within Rv2751 at 3064.249 kb on - strand, within Rv2751 at 3064.257 kb on - strand, within Rv2751 at 3064.311 kb on - strand, within Rv2751 at 3064.369 kb on - strand, within Rv2751 at 3064.517 kb on - strand at 3065.355 kb on + strand, within Rv2752c at 3065.491 kb on - strand, within Rv2752c at 3065.637 kb on + strand, within Rv2752c at 3065.829 kb on + strand, within Rv2752c at 3065.836 kb on + strand, within Rv2752c at 3066.184 kb on - strand at 3067.090 kb on - strand at 3067.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Formaldehyde 0.23 mM remove 3,063,632 + +0.1 3,063,810 + Rv2751 0.19 +0.3 3,063,811 - Rv2751 0.19 -0.2 3,064,248 + Rv2751 0.68 +0.8 3,064,249 - Rv2751 0.69 -0.1 3,064,257 - Rv2751 0.69 -0.3 3,064,311 - Rv2751 0.76 -1.1 3,064,369 - Rv2751 0.82 -0.0 3,064,517 - +0.2 3,065,355 + Rv2752c 0.50 -0.6 3,065,491 - Rv2752c 0.58 -0.7 3,065,637 + Rv2752c 0.67 +0.2 3,065,829 + Rv2752c 0.78 -2.2 3,065,836 + Rv2752c 0.79 -0.8 3,066,184 - +1.5 3,067,090 - +0.1 3,067,149 + -0.0
Or see this region's nucleotide sequence