Experiment: 7H9 with Formaldehyde 0.23 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0417 and Rv0418 are separated by 371 nucleotides Rv0418 and Rv0419 are separated by 87 nucleotides
Rv0417: Rv0417 - Probable thiamin biosynthesis protein ThiG (thiazole biosynthesis protein), at 502,366 to 503,124
Rv0417
Rv0418: Rv0418 - Probable lipoprotein aminopeptidase LpqL, at 503,496 to 504,998
Rv0418
Rv0419: Rv0419 - Possible lipoprotein peptidase LpqM, at 505,086 to 506,582
Rv0419
Position (kb) 503
504
505 Strain fitness (log2 ratio) -1
0
1
2 at 503.198 kb on + strand at 503.199 kb on - strand at 503.211 kb on + strand at 503.287 kb on + strand at 503.302 kb on + strand at 503.378 kb on + strand at 503.401 kb on - strand at 503.582 kb on + strand at 503.582 kb on + strand at 504.128 kb on + strand, within Rv0418 at 504.132 kb on - strand, within Rv0418 at 504.565 kb on - strand, within Rv0418 at 504.834 kb on + strand, within Rv0418 at 504.835 kb on - strand, within Rv0418 at 504.866 kb on - strand at 504.906 kb on + strand at 504.906 kb on + strand at 504.921 kb on + strand at 505.389 kb on + strand, within Rv0419 at 505.404 kb on + strand, within Rv0419 at 505.475 kb on + strand, within Rv0419 at 505.476 kb on - strand, within Rv0419 at 505.503 kb on + strand, within Rv0419 at 505.503 kb on + strand, within Rv0419 at 505.504 kb on - strand, within Rv0419 at 505.588 kb on - strand, within Rv0419 at 505.664 kb on + strand, within Rv0419 at 505.722 kb on + strand, within Rv0419 at 505.745 kb on + strand, within Rv0419 at 505.745 kb on + strand, within Rv0419 at 505.760 kb on + strand, within Rv0419 at 505.761 kb on - strand, within Rv0419
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Formaldehyde 0.23 mM remove 503,198 + +0.3 503,199 - +0.4 503,211 + -0.9 503,287 + -0.5 503,302 + +0.5 503,378 + -0.2 503,401 - -0.9 503,582 + -0.9 503,582 + -0.0 504,128 + Rv0418 0.42 -1.2 504,132 - Rv0418 0.42 -0.6 504,565 - Rv0418 0.71 -0.4 504,834 + Rv0418 0.89 -1.6 504,835 - Rv0418 0.89 -0.2 504,866 - +0.7 504,906 + -1.3 504,906 + -0.5 504,921 + -0.0 505,389 + Rv0419 0.20 +0.3 505,404 + Rv0419 0.21 -0.2 505,475 + Rv0419 0.26 +0.2 505,476 - Rv0419 0.26 +1.6 505,503 + Rv0419 0.28 -0.4 505,503 + Rv0419 0.28 -0.1 505,504 - Rv0419 0.28 +0.2 505,588 - Rv0419 0.34 -0.2 505,664 + Rv0419 0.39 +2.6 505,722 + Rv0419 0.42 -0.4 505,745 + Rv0419 0.44 -0.7 505,745 + Rv0419 0.44 +1.2 505,760 + Rv0419 0.45 -0.2 505,761 - Rv0419 0.45 -0.1
Or see this region's nucleotide sequence