Experiment: 7H9 with Formaldehyde 0.23 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0091 and Rv0092 are separated by 131 nucleotides Rv0092 and Rv0093c overlap by 54 nucleotides Rv0093c and Rv0094c are separated by 46 nucleotides
Rv0091: Rv0091 - Probable bifunctional MTA/SAH nucleosidase Mtn: 5'-methylthioadenosine nucleosidase (methylthioadenosine methylthioribohydrolase) + S-adenosylhomocysteine nucleosidase (S-adenosyl-L-homocysteine homocysteinylribohydrolase), at 99,684 to 100,451
Rv0091
Rv0092: Rv0092 - Cation transporter P-type ATPase a CtpA, at 100,583 to 102,868
Rv0092
Rv0093c: Rv0093c - Probable conserved membrane protein, at 102,815 to 103,663
Rv0093c
Rv0094c: Rv0094c - Conserved hypothetical protein, at 103,710 to 104,663
Rv0094c
Position (kb) 100
101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.940 kb on + strand, within Rv0091 at 99.941 kb on - strand, within Rv0091 at 99.941 kb on - strand, within Rv0091 at 100.021 kb on - strand, within Rv0091 at 100.176 kb on + strand, within Rv0091 at 100.179 kb on + strand, within Rv0091 at 100.179 kb on + strand, within Rv0091 at 100.207 kb on - strand, within Rv0091 at 100.207 kb on - strand, within Rv0091 at 100.505 kb on + strand at 100.517 kb on + strand at 100.518 kb on - strand at 100.629 kb on + strand at 100.805 kb on + strand at 100.983 kb on + strand, within Rv0092 at 100.984 kb on - strand, within Rv0092 at 101.124 kb on - strand, within Rv0092 at 101.124 kb on - strand, within Rv0092 at 101.195 kb on - strand, within Rv0092 at 101.195 kb on - strand, within Rv0092 at 101.319 kb on + strand, within Rv0092 at 101.320 kb on - strand, within Rv0092 at 101.409 kb on + strand, within Rv0092 at 101.409 kb on + strand, within Rv0092 at 101.410 kb on - strand, within Rv0092 at 101.643 kb on + strand, within Rv0092 at 101.644 kb on - strand, within Rv0092 at 101.851 kb on - strand, within Rv0092 at 102.531 kb on + strand, within Rv0092 at 102.613 kb on - strand, within Rv0092 at 103.405 kb on + strand, within Rv0093c at 103.534 kb on + strand, within Rv0093c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Formaldehyde 0.23 mM remove 99,940 + Rv0091 0.33 -0.0 99,941 - Rv0091 0.33 -0.2 99,941 - Rv0091 0.33 +0.4 100,021 - Rv0091 0.44 -1.2 100,176 + Rv0091 0.64 +0.0 100,179 + Rv0091 0.64 +0.8 100,179 + Rv0091 0.64 -2.8 100,207 - Rv0091 0.68 +0.9 100,207 - Rv0091 0.68 +1.3 100,505 + -0.6 100,517 + +0.1 100,518 - +1.8 100,629 + +0.1 100,805 + -0.7 100,983 + Rv0092 0.17 -2.2 100,984 - Rv0092 0.18 +0.2 101,124 - Rv0092 0.24 -1.7 101,124 - Rv0092 0.24 -1.0 101,195 - Rv0092 0.27 -0.6 101,195 - Rv0092 0.27 -0.7 101,319 + Rv0092 0.32 -0.4 101,320 - Rv0092 0.32 -2.0 101,409 + Rv0092 0.36 -0.2 101,409 + Rv0092 0.36 +1.1 101,410 - Rv0092 0.36 -1.2 101,643 + Rv0092 0.46 -0.8 101,644 - Rv0092 0.46 -3.7 101,851 - Rv0092 0.55 -0.7 102,531 + Rv0092 0.85 -1.7 102,613 - Rv0092 0.89 -2.7 103,405 + Rv0093c 0.69 +0.3 103,534 + Rv0093c 0.85 +0.2
Or see this region's nucleotide sequence