Experiment: 7H9 with methylglyoxal 1.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0209 and Rv0210 overlap by 4 nucleotides Rv0210 and Rv0211 are separated by 183 nucleotides
Rv0209: Rv0209 - Hypothetical protein, at 249,038 to 250,123
Rv0209
Rv0210: Rv0210 - Hypothetical protein, at 250,120 to 251,598
Rv0210
Rv0211: Rv0211 - Probable iron-regulated phosphoenolpyruvate carboxykinase [GTP] PckA (phosphoenolpyruvate carboxylase) (PEPCK)(pep carboxykinase), at 251,782 to 253,602
Rv0211
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1
2 at 249.282 kb on - strand, within Rv0209 at 249.436 kb on + strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.619 kb on - strand, within Rv0209 at 249.924 kb on + strand, within Rv0209 at 249.925 kb on - strand, within Rv0209 at 249.925 kb on - strand, within Rv0209 at 250.004 kb on + strand, within Rv0209 at 250.005 kb on - strand, within Rv0209 at 250.303 kb on - strand, within Rv0210 at 250.303 kb on - strand, within Rv0210 at 250.440 kb on - strand, within Rv0210 at 250.488 kb on + strand, within Rv0210 at 250.488 kb on + strand, within Rv0210 at 250.489 kb on - strand, within Rv0210 at 250.489 kb on - strand, within Rv0210 at 250.846 kb on + strand, within Rv0210 at 251.400 kb on + strand, within Rv0210 at 251.401 kb on - strand, within Rv0210 at 251.690 kb on + strand at 251.730 kb on + strand at 251.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with methylglyoxal 1.2 mM remove 249,282 - Rv0209 0.22 -1.0 249,436 + Rv0209 0.37 +0.8 249,437 - Rv0209 0.37 -0.4 249,437 - Rv0209 0.37 -0.6 249,619 - Rv0209 0.53 +0.2 249,924 + Rv0209 0.82 -0.4 249,925 - Rv0209 0.82 -2.1 249,925 - Rv0209 0.82 +0.7 250,004 + Rv0209 0.89 +2.7 250,005 - Rv0209 0.89 +1.2 250,303 - Rv0210 0.12 -0.1 250,303 - Rv0210 0.12 -0.2 250,440 - Rv0210 0.22 -0.3 250,488 + Rv0210 0.25 -0.7 250,488 + Rv0210 0.25 -0.2 250,489 - Rv0210 0.25 -0.8 250,489 - Rv0210 0.25 +2.7 250,846 + Rv0210 0.49 -0.3 251,400 + Rv0210 0.87 -0.5 251,401 - Rv0210 0.87 +0.3 251,690 + +0.7 251,730 + -0.8 251,734 + -0.1
Or see this region's nucleotide sequence