Experiment: 7H9 with Ramoplanin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0580c and Rv0581 are separated by 93 nucleotides Rv0581 and Rv0582 overlap by 4 nucleotides Rv0582 and Rv0583c are separated by 59 nucleotides Rv0583c and Rv0584 are separated by 153 nucleotides
Rv0580c: Rv0580c - Conserved protein, at 677,125 to 677,616
Rv0580c
Rv0581: Rv0581 - Possible antitoxin VapB26, at 677,710 to 677,925
Rv0581
Rv0582: Rv0582 - Possible toxin VapC26. Contains PIN domain., at 677,922 to 678,329
Rv0582
Rv0583c: Rv0583c - Probable conserved lipoprotein LpqN, at 678,389 to 679,075
Rv0583c
Rv0584: Rv0584 - Possible conserved exported protein, at 679,229 to 681,862
Rv0584
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.627 kb on + strand at 677.680 kb on - strand at 677.859 kb on - strand, within Rv0581 at 677.859 kb on - strand, within Rv0581 at 677.861 kb on - strand, within Rv0581 at 678.555 kb on + strand, within Rv0583c at 678.555 kb on + strand, within Rv0583c at 678.766 kb on - strand, within Rv0583c at 678.885 kb on + strand, within Rv0583c at 678.886 kb on - strand, within Rv0583c at 678.900 kb on + strand, within Rv0583c at 678.901 kb on - strand, within Rv0583c at 678.940 kb on + strand, within Rv0583c at 678.941 kb on - strand, within Rv0583c at 679.210 kb on + strand at 679.218 kb on - strand at 679.319 kb on + strand at 679.479 kb on - strand at 679.487 kb on + strand at 679.488 kb on - strand at 679.488 kb on - strand at 679.494 kb on - strand, within Rv0584 at 679.658 kb on + strand, within Rv0584 at 679.659 kb on - strand, within Rv0584 at 679.662 kb on - strand, within Rv0584 at 679.662 kb on - strand, within Rv0584 at 679.669 kb on - strand, within Rv0584 at 679.802 kb on + strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.886 kb on + strand, within Rv0584 at 679.931 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.052 kb on - strand, within Rv0584
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ramoplanin 0.009 mM remove 677,627 + -1.0 677,680 - +0.0 677,859 - Rv0581 0.69 +0.2 677,859 - Rv0581 0.69 +0.6 677,861 - Rv0581 0.70 -2.0 678,555 + Rv0583c 0.24 -0.4 678,555 + Rv0583c 0.24 -0.9 678,766 - Rv0583c 0.55 -0.4 678,885 + Rv0583c 0.72 -0.7 678,886 - Rv0583c 0.72 -1.0 678,900 + Rv0583c 0.74 -1.4 678,901 - Rv0583c 0.75 -1.5 678,940 + Rv0583c 0.80 -1.0 678,941 - Rv0583c 0.80 -1.3 679,210 + -1.0 679,218 - -1.4 679,319 + +1.6 679,479 - +2.0 679,487 + +0.9 679,488 - -0.8 679,488 - +0.4 679,494 - Rv0584 0.10 +0.1 679,658 + Rv0584 0.16 -1.0 679,659 - Rv0584 0.16 -0.1 679,662 - Rv0584 0.16 -1.6 679,662 - Rv0584 0.16 -0.3 679,669 - Rv0584 0.17 -1.5 679,802 + Rv0584 0.22 -0.1 679,803 - Rv0584 0.22 +2.0 679,803 - Rv0584 0.22 +0.1 679,803 - Rv0584 0.22 -0.1 679,886 + Rv0584 0.25 -1.2 679,931 + Rv0584 0.27 -0.4 680,051 + Rv0584 0.31 +1.0 680,051 + Rv0584 0.31 -0.9 680,051 + Rv0584 0.31 -0.4 680,052 - Rv0584 0.31 -0.7
Or see this region's nucleotide sequence