Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0170 and Rv0171 overlap by 4 nucleotides Rv0171 and Rv0172 overlap by 4 nucleotides
Rv0170: Rv0170 - Mce-family protein Mce1B, at 199,895 to 200,935
Rv0170
Rv0171: Rv0171 - Mce-family protein Mce1C, at 200,932 to 202,479
Rv0171
Rv0172: Rv0172 - Mce-family protein Mce1D, at 202,476 to 204,068
Rv0172
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 200.002 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.421 kb on + strand, within Rv0170 at 200.563 kb on + strand, within Rv0170 at 200.702 kb on + strand, within Rv0170 at 200.832 kb on - strand at 201.104 kb on + strand, within Rv0171 at 201.437 kb on - strand, within Rv0171 at 201.437 kb on - strand, within Rv0171 at 201.472 kb on - strand, within Rv0171 at 201.518 kb on + strand, within Rv0171 at 201.521 kb on + strand, within Rv0171 at 201.522 kb on - strand, within Rv0171 at 201.581 kb on + strand, within Rv0171 at 201.594 kb on + strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.595 kb on - strand, within Rv0171 at 201.839 kb on - strand, within Rv0171 at 201.919 kb on - strand, within Rv0171 at 201.961 kb on + strand, within Rv0171 at 201.961 kb on + strand, within Rv0171 at 201.962 kb on - strand, within Rv0171 at 202.494 kb on - strand at 202.676 kb on + strand, within Rv0172 at 202.677 kb on - strand, within Rv0172 at 202.677 kb on - strand, within Rv0172 at 202.758 kb on + strand, within Rv0172 at 202.758 kb on + strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.759 kb on - strand, within Rv0172 at 202.839 kb on + strand, within Rv0172 at 202.839 kb on + strand, within Rv0172 at 202.937 kb on + strand, within Rv0172 at 203.031 kb on - strand, within Rv0172 at 203.114 kb on - strand, within Rv0172 at 203.143 kb on + strand, within Rv0172 at 203.319 kb on - strand, within Rv0172 at 203.424 kb on + strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172 at 203.425 kb on - strand, within Rv0172
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 200,002 + Rv0170 0.10 +0.3 200,097 + Rv0170 0.19 -0.4 200,097 + Rv0170 0.19 +0.5 200,162 + Rv0170 0.26 +0.5 200,162 + Rv0170 0.26 +1.2 200,421 + Rv0170 0.51 +1.0 200,563 + Rv0170 0.64 -1.7 200,702 + Rv0170 0.78 -0.1 200,832 - +0.1 201,104 + Rv0171 0.11 -0.3 201,437 - Rv0171 0.33 +0.1 201,437 - Rv0171 0.33 +3.0 201,472 - Rv0171 0.35 +1.2 201,518 + Rv0171 0.38 -0.5 201,521 + Rv0171 0.38 +0.0 201,522 - Rv0171 0.38 +0.5 201,581 + Rv0171 0.42 -0.6 201,594 + Rv0171 0.43 +0.2 201,595 - Rv0171 0.43 +0.2 201,595 - Rv0171 0.43 +0.4 201,839 - Rv0171 0.59 -2.3 201,919 - Rv0171 0.64 +0.7 201,961 + Rv0171 0.66 +0.4 201,961 + Rv0171 0.66 +0.9 201,962 - Rv0171 0.67 +0.9 202,494 - -0.4 202,676 + Rv0172 0.13 +0.5 202,677 - Rv0172 0.13 -0.2 202,677 - Rv0172 0.13 +0.7 202,758 + Rv0172 0.18 +1.5 202,758 + Rv0172 0.18 +0.7 202,759 - Rv0172 0.18 +0.7 202,759 - Rv0172 0.18 -0.1 202,759 - Rv0172 0.18 -0.6 202,759 - Rv0172 0.18 +0.1 202,839 + Rv0172 0.23 -0.5 202,839 + Rv0172 0.23 +1.5 202,937 + Rv0172 0.29 +2.0 203,031 - Rv0172 0.35 +1.6 203,114 - Rv0172 0.40 -0.7 203,143 + Rv0172 0.42 +0.4 203,319 - Rv0172 0.53 +0.2 203,424 + Rv0172 0.60 +0.4 203,425 - Rv0172 0.60 +0.4 203,425 - Rv0172 0.60 +0.0 203,425 - Rv0172 0.60 +0.2
Or see this region's nucleotide sequence