Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3829c and Rv3830c are separated by 47 nucleotides Rv3830c and Rv3831 are separated by 71 nucleotides Rv3831 and Rv3832c overlap by 4 nucleotides Rv3832c and Rv3833 are separated by 55 nucleotides
Rv3829c: Rv3829c - Probable dehydrogenase, at 4,303,398 to 4,305,008
Rv3829c
Rv3830c: Rv3830c - Transcriptional regulatory protein (probably TetR-family), at 4,305,056 to 4,305,685
Rv3830c
Rv3831: Rv3831 - Hypothetical protein, at 4,305,757 to 4,306,239
Rv3831
Rv3832c: Rv3832c - Conserved protein, at 4,306,236 to 4,306,811
Rv3832c
Rv3833: Rv3833 - Transcriptional regulatory protein (probably AraC-family), at 4,306,867 to 4,307,658
Rv3833
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4304.906 kb on + strand at 4304.907 kb on - strand at 4304.907 kb on - strand at 4304.989 kb on - strand at 4305.008 kb on + strand at 4305.323 kb on - strand, within Rv3830c at 4305.376 kb on - strand, within Rv3830c at 4305.537 kb on + strand, within Rv3830c at 4305.880 kb on + strand, within Rv3831 at 4305.881 kb on - strand, within Rv3831 at 4305.883 kb on + strand, within Rv3831 at 4305.883 kb on + strand, within Rv3831 at 4305.883 kb on + strand, within Rv3831 at 4305.884 kb on - strand, within Rv3831 at 4305.884 kb on - strand, within Rv3831 at 4305.997 kb on + strand, within Rv3831 at 4306.048 kb on + strand, within Rv3831 at 4306.048 kb on + strand, within Rv3831 at 4306.048 kb on + strand, within Rv3831 at 4306.049 kb on - strand, within Rv3831 at 4306.049 kb on - strand, within Rv3831 at 4306.130 kb on - strand, within Rv3831 at 4306.177 kb on + strand, within Rv3831 at 4306.298 kb on + strand, within Rv3832c at 4306.299 kb on - strand, within Rv3832c at 4306.299 kb on - strand, within Rv3832c at 4306.358 kb on - strand, within Rv3832c at 4306.358 kb on - strand, within Rv3832c at 4306.374 kb on + strand, within Rv3832c at 4306.374 kb on + strand, within Rv3832c at 4306.374 kb on + strand, within Rv3832c at 4306.374 kb on + strand, within Rv3832c at 4306.374 kb on + strand, within Rv3832c at 4306.375 kb on - strand, within Rv3832c at 4306.375 kb on - strand, within Rv3832c at 4306.375 kb on - strand, within Rv3832c at 4306.377 kb on + strand, within Rv3832c at 4306.459 kb on - strand, within Rv3832c at 4306.794 kb on + strand at 4306.824 kb on + strand at 4306.824 kb on + strand at 4306.824 kb on + strand at 4306.824 kb on + strand at 4306.824 kb on + strand at 4306.824 kb on + strand at 4306.825 kb on - strand at 4306.825 kb on - strand at 4306.825 kb on - strand at 4306.828 kb on + strand at 4306.863 kb on + strand at 4307.099 kb on + strand, within Rv3833
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 4,304,906 + +0.4 4,304,907 - +0.1 4,304,907 - -0.2 4,304,989 - -0.0 4,305,008 + +2.0 4,305,323 - Rv3830c 0.42 +0.8 4,305,376 - Rv3830c 0.51 -0.3 4,305,537 + Rv3830c 0.76 -0.4 4,305,880 + Rv3831 0.25 +1.4 4,305,881 - Rv3831 0.26 -0.5 4,305,883 + Rv3831 0.26 -0.5 4,305,883 + Rv3831 0.26 -1.0 4,305,883 + Rv3831 0.26 -0.3 4,305,884 - Rv3831 0.26 +3.1 4,305,884 - Rv3831 0.26 -0.0 4,305,997 + Rv3831 0.50 -1.8 4,306,048 + Rv3831 0.60 +0.2 4,306,048 + Rv3831 0.60 -0.2 4,306,048 + Rv3831 0.60 +1.0 4,306,049 - Rv3831 0.60 -0.5 4,306,049 - Rv3831 0.60 +0.6 4,306,130 - Rv3831 0.77 -0.5 4,306,177 + Rv3831 0.87 +1.2 4,306,298 + Rv3832c 0.11 +0.3 4,306,299 - Rv3832c 0.11 -0.2 4,306,299 - Rv3832c 0.11 -0.1 4,306,358 - Rv3832c 0.21 +0.2 4,306,358 - Rv3832c 0.21 -0.2 4,306,374 + Rv3832c 0.24 +0.1 4,306,374 + Rv3832c 0.24 +0.2 4,306,374 + Rv3832c 0.24 -1.0 4,306,374 + Rv3832c 0.24 -0.0 4,306,374 + Rv3832c 0.24 -0.4 4,306,375 - Rv3832c 0.24 -0.5 4,306,375 - Rv3832c 0.24 -0.0 4,306,375 - Rv3832c 0.24 +2.1 4,306,377 + Rv3832c 0.24 +0.9 4,306,459 - Rv3832c 0.39 +0.2 4,306,794 + -1.0 4,306,824 + +0.1 4,306,824 + +0.6 4,306,824 + -0.0 4,306,824 + -0.5 4,306,824 + +0.5 4,306,824 + +0.5 4,306,825 - -0.3 4,306,825 - -0.3 4,306,825 - -0.0 4,306,828 + -0.3 4,306,863 + +0.0 4,307,099 + Rv3833 0.29 -0.7
Or see this region's nucleotide sequence