Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0660c and Rv0661c are separated by 109 nucleotides Rv0661c and Rv0662c overlap by 4 nucleotides Rv0662c and Rv0663 are separated by 113 nucleotides Rv0663 and Rv0664 are separated by 31 nucleotides Rv0664 and Rv0665 overlap by 4 nucleotides Rv0665 and Rv0666 overlap by 4 nucleotides
Rv0660c: Rv0660c - Possible antitoxin MazE2, at 754,980 to 755,225
Rv0660c
Rv0661c: Rv0661c - Possible toxin VapC7, at 755,335 to 755,772
Rv0661c
Rv0662c: Rv0662c - Possible antitoxin VapB7, at 755,769 to 756,023
Rv0662c
Rv0663: Rv0663 - Possible arylsulfatase AtsD (aryl-sulfate sulphohydrolase) (arylsulphatase), at 756,137 to 758,500
Rv0663
Rv0664: Rv0664 - Possible antitoxin VapB8, at 758,532 to 758,804
Rv0664
Rv0665: Rv0665 - Possible toxin VapC8, at 758,801 to 759,139
Rv0665
Rv0666: Rv0666 - Possible membrane protein, at 759,136 to 759,309
Rv0666
Position (kb) 756
757
758
759 Strain fitness (log2 ratio) -1
0
1
2 at 755.249 kb on + strand at 755.249 kb on + strand at 755.250 kb on - strand at 755.250 kb on - strand at 755.250 kb on - strand at 755.280 kb on - strand at 755.280 kb on - strand at 755.280 kb on - strand at 755.311 kb on + strand at 755.311 kb on + strand at 755.572 kb on - strand, within Rv0661c at 755.623 kb on + strand, within Rv0661c at 755.767 kb on + strand at 755.768 kb on - strand at 756.023 kb on + strand at 756.023 kb on + strand at 756.029 kb on + strand at 756.030 kb on - strand at 756.112 kb on + strand at 756.122 kb on + strand at 756.197 kb on + strand at 756.197 kb on + strand at 756.707 kb on + strand, within Rv0663 at 756.842 kb on + strand, within Rv0663 at 756.843 kb on - strand, within Rv0663 at 756.903 kb on - strand, within Rv0663 at 757.173 kb on - strand, within Rv0663 at 757.316 kb on + strand, within Rv0663 at 757.317 kb on - strand, within Rv0663 at 757.327 kb on + strand, within Rv0663 at 757.327 kb on + strand, within Rv0663 at 757.528 kb on - strand, within Rv0663 at 757.577 kb on + strand, within Rv0663 at 757.653 kb on - strand, within Rv0663 at 758.117 kb on + strand, within Rv0663 at 758.123 kb on + strand, within Rv0663 at 758.151 kb on - strand, within Rv0663 at 758.787 kb on - strand at 758.832 kb on + strand at 758.837 kb on - strand, within Rv0665 at 758.908 kb on + strand, within Rv0665 at 759.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 755,249 + +0.7 755,249 + +0.2 755,250 - -0.9 755,250 - -1.6 755,250 - +0.3 755,280 - +1.7 755,280 - -0.5 755,280 - -0.1 755,311 + -0.3 755,311 + -0.3 755,572 - Rv0661c 0.54 +0.3 755,623 + Rv0661c 0.66 -0.7 755,767 + -0.4 755,768 - -0.7 756,023 + +0.3 756,023 + -0.1 756,029 + -0.4 756,030 - -1.3 756,112 + +1.0 756,122 + +0.7 756,197 + -0.7 756,197 + -0.6 756,707 + Rv0663 0.24 +1.1 756,842 + Rv0663 0.30 +0.5 756,843 - Rv0663 0.30 -0.1 756,903 - Rv0663 0.32 +0.9 757,173 - Rv0663 0.44 -0.2 757,316 + Rv0663 0.50 +0.7 757,317 - Rv0663 0.50 +1.1 757,327 + Rv0663 0.50 +1.0 757,327 + Rv0663 0.50 +0.0 757,528 - Rv0663 0.59 -1.5 757,577 + Rv0663 0.61 -0.5 757,653 - Rv0663 0.64 -0.2 758,117 + Rv0663 0.84 -0.3 758,123 + Rv0663 0.84 -0.2 758,151 - Rv0663 0.85 +1.2 758,787 - -0.7 758,832 + +1.9 758,837 - Rv0665 0.11 -0.5 758,908 + Rv0665 0.32 +0.1 759,410 + -0.4
Or see this region's nucleotide sequence