Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0650 and Rv0651 are separated by 330 nucleotides Rv0651 and Rv0652 are separated by 36 nucleotides Rv0652 and Rv0653c overlap by 8 nucleotides Rv0653c and Rv0654 are separated by 70 nucleotides
Rv0650: Rv0650 - Possible sugar kinase, at 747,037 to 747,945
Rv0650
Rv0651: Rv0651 - 50S ribosomal protein L10 RplJ, at 748,276 to 748,812
Rv0651
Rv0652: Rv0652 - 50S ribosomal protein L7/L12 RplL (SA1), at 748,849 to 749,241
Rv0652
Rv0653c: Rv0653c - Possible transcriptional regulatory protein (probably TetR-family), at 749,234 to 749,929
Rv0653c
Rv0654: Rv0654 - Probable dioxygenase, at 750,000 to 751,505
Rv0654
Position (kb) 748
749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 747.943 kb on + strand at 748.010 kb on - strand at 748.047 kb on + strand at 749.239 kb on + strand at 749.240 kb on - strand at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.635 kb on - strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.800 kb on - strand, within Rv0653c at 750.073 kb on + strand at 750.073 kb on + strand at 750.073 kb on + strand at 750.074 kb on - strand at 750.074 kb on - strand at 750.130 kb on - strand at 750.130 kb on - strand at 750.138 kb on - strand at 750.177 kb on + strand, within Rv0654 at 750.177 kb on + strand, within Rv0654 at 750.178 kb on - strand, within Rv0654
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 747,943 + -2.0 748,010 - -0.6 748,047 + -0.8 749,239 + +2.7 749,240 - -1.1 749,447 + Rv0653c 0.31 -1.4 749,447 + Rv0653c 0.31 -0.6 749,447 + Rv0653c 0.31 -0.2 749,448 - Rv0653c 0.31 -1.1 749,448 - Rv0653c 0.31 -2.0 749,634 + Rv0653c 0.57 -3.6 749,634 + Rv0653c 0.57 -0.3 749,635 - Rv0653c 0.58 -0.5 749,744 + Rv0653c 0.73 -0.6 749,744 + Rv0653c 0.73 -0.4 749,800 - Rv0653c 0.81 -0.9 750,073 + -0.5 750,073 + +0.1 750,073 + +0.1 750,074 - +0.1 750,074 - +0.9 750,130 - -1.0 750,130 - -0.8 750,138 - -0.1 750,177 + Rv0654 0.12 -0.4 750,177 + Rv0654 0.12 -0.5 750,178 - Rv0654 0.12 -0.8
Or see this region's nucleotide sequence