Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0602c and Rv0603 are separated by 56 nucleotides Rv0603 and Rv0604 are separated by 71 nucleotides Rv0604 and Rv0605 are separated by 216 nucleotides Rv0605 and Rv0606 are separated by 1 nucleotides
Rv0602c: Rv0602c - Two component DNA binding transcriptional regulatory protein TcrA, at 699,038 to 699,799
Rv0602c
Rv0603: Rv0603 - Possible exported protein, at 699,856 to 700,167
Rv0603
Rv0604: Rv0604 - Probable conserved lipoprotein LpqO, at 700,239 to 701,189
Rv0604
Rv0605: Rv0605 - Possible resolvase, at 701,406 to 702,014
Rv0605
Rv0606: Rv0606 - Possible transposase (fragment), at 702,016 to 702,759
Rv0606
Position (kb) 700
701
702 Strain fitness (log2 ratio) -1
0
1
2 at 699.549 kb on - strand, within Rv0602c at 699.549 kb on - strand, within Rv0602c at 700.165 kb on + strand at 700.227 kb on - strand at 700.227 kb on - strand at 700.443 kb on + strand, within Rv0604 at 700.875 kb on + strand, within Rv0604 at 701.069 kb on - strand, within Rv0604 at 701.106 kb on + strand at 701.106 kb on + strand at 701.106 kb on + strand at 701.107 kb on - strand at 701.208 kb on - strand at 701.348 kb on + strand at 701.349 kb on - strand at 701.397 kb on + strand at 701.398 kb on - strand at 701.418 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.430 kb on - strand at 701.592 kb on + strand, within Rv0605 at 701.592 kb on + strand, within Rv0605 at 701.732 kb on + strand, within Rv0605 at 701.733 kb on - strand, within Rv0605 at 701.733 kb on - strand, within Rv0605 at 701.733 kb on - strand, within Rv0605 at 701.817 kb on + strand, within Rv0605 at 701.818 kb on - strand, within Rv0605 at 702.133 kb on + strand, within Rv0606 at 702.134 kb on - strand, within Rv0606 at 702.134 kb on - strand, within Rv0606
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 699,549 - Rv0602c 0.67 +1.2 699,549 - Rv0602c 0.67 -0.2 700,165 + -0.3 700,227 - +1.6 700,227 - -0.1 700,443 + Rv0604 0.21 -1.7 700,875 + Rv0604 0.67 -0.1 701,069 - Rv0604 0.87 -0.2 701,106 + -1.2 701,106 + +0.1 701,106 + -0.3 701,107 - -0.5 701,208 - -0.2 701,348 + +0.1 701,349 - +2.2 701,397 + -0.3 701,398 - -0.1 701,418 - -0.5 701,430 - +0.6 701,430 - -0.1 701,430 - -0.4 701,430 - +0.3 701,430 - -0.5 701,592 + Rv0605 0.31 -0.3 701,592 + Rv0605 0.31 -0.2 701,732 + Rv0605 0.54 +0.6 701,733 - Rv0605 0.54 -0.7 701,733 - Rv0605 0.54 +0.2 701,733 - Rv0605 0.54 +0.9 701,817 + Rv0605 0.67 +0.8 701,818 - Rv0605 0.68 +0.6 702,133 + Rv0606 0.16 -0.5 702,134 - Rv0606 0.16 +0.5 702,134 - Rv0606 0.16 +0.0
Or see this region's nucleotide sequence