Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0433 and Rv0434 are separated by 59 nucleotides Rv0434 and Rv0435c are separated by 179 nucleotides
Rv0433: Rv0433 - Conserved hypothetical protein, at 520,324 to 521,454
Rv0433
Rv0434: Rv0434 - Conserved hypothetical protein, at 521,514 to 522,167
Rv0434
Rv0435c: Rv0435c - Putative conserved ATPase, at 522,347 to 524,533
Rv0435c
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2 at 520.536 kb on + strand, within Rv0433 at 520.737 kb on - strand, within Rv0433 at 520.801 kb on + strand, within Rv0433 at 520.802 kb on - strand, within Rv0433 at 520.804 kb on + strand, within Rv0433 at 520.805 kb on - strand, within Rv0433 at 520.805 kb on - strand, within Rv0433 at 520.864 kb on + strand, within Rv0433 at 520.957 kb on + strand, within Rv0433 at 520.957 kb on + strand, within Rv0433 at 520.989 kb on + strand, within Rv0433 at 521.012 kb on + strand, within Rv0433 at 521.012 kb on + strand, within Rv0433 at 521.013 kb on - strand, within Rv0433 at 521.013 kb on - strand, within Rv0433 at 521.508 kb on + strand at 521.509 kb on - strand at 521.509 kb on - strand at 521.509 kb on - strand at 521.611 kb on - strand, within Rv0434 at 521.665 kb on + strand, within Rv0434 at 521.665 kb on + strand, within Rv0434 at 521.666 kb on - strand, within Rv0434 at 521.666 kb on - strand, within Rv0434 at 521.666 kb on - strand, within Rv0434 at 521.767 kb on - strand, within Rv0434 at 521.767 kb on - strand, within Rv0434 at 521.768 kb on + strand, within Rv0434 at 521.768 kb on + strand, within Rv0434 at 521.768 kb on + strand, within Rv0434 at 521.769 kb on - strand, within Rv0434 at 521.846 kb on - strand, within Rv0434 at 522.165 kb on + strand at 522.166 kb on - strand at 522.229 kb on + strand at 522.230 kb on - strand at 522.230 kb on - strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.232 kb on - strand at 522.232 kb on - strand at 522.379 kb on + strand at 522.533 kb on - strand at 522.533 kb on - strand at 522.693 kb on - strand, within Rv0435c at 522.719 kb on + strand, within Rv0435c at 522.719 kb on + strand, within Rv0435c at 522.720 kb on - strand, within Rv0435c at 522.748 kb on + strand, within Rv0435c at 522.748 kb on + strand, within Rv0435c at 522.887 kb on + strand, within Rv0435c at 523.056 kb on - strand, within Rv0435c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 520,536 + Rv0433 0.19 +0.4 520,737 - Rv0433 0.37 +1.3 520,801 + Rv0433 0.42 -0.0 520,802 - Rv0433 0.42 -1.2 520,804 + Rv0433 0.42 -0.5 520,805 - Rv0433 0.43 +1.6 520,805 - Rv0433 0.43 +0.3 520,864 + Rv0433 0.48 -0.0 520,957 + Rv0433 0.56 +0.2 520,957 + Rv0433 0.56 +0.0 520,989 + Rv0433 0.59 +1.6 521,012 + Rv0433 0.61 -0.3 521,012 + Rv0433 0.61 +0.1 521,013 - Rv0433 0.61 -1.1 521,013 - Rv0433 0.61 -0.9 521,508 + +0.0 521,509 - +0.1 521,509 - -0.2 521,509 - -0.2 521,611 - Rv0434 0.15 +1.0 521,665 + Rv0434 0.23 +0.4 521,665 + Rv0434 0.23 +0.3 521,666 - Rv0434 0.23 -0.1 521,666 - Rv0434 0.23 +1.2 521,666 - Rv0434 0.23 +1.0 521,767 - Rv0434 0.39 +0.8 521,767 - Rv0434 0.39 +1.3 521,768 + Rv0434 0.39 +1.6 521,768 + Rv0434 0.39 -0.3 521,768 + Rv0434 0.39 +0.0 521,769 - Rv0434 0.39 +0.6 521,846 - Rv0434 0.51 -0.3 522,165 + -0.4 522,166 - +0.2 522,229 + -1.2 522,230 - +2.4 522,230 - -0.7 522,231 + -0.0 522,231 + +0.4 522,231 + -0.7 522,231 + +0.3 522,231 + -0.5 522,232 - +0.0 522,232 - -0.2 522,379 + -0.3 522,533 - -0.7 522,533 - +0.1 522,693 - Rv0435c 0.16 -0.4 522,719 + Rv0435c 0.17 +1.2 522,719 + Rv0435c 0.17 -0.7 522,720 - Rv0435c 0.17 +0.4 522,748 + Rv0435c 0.18 +0.5 522,748 + Rv0435c 0.18 -2.2 522,887 + Rv0435c 0.25 -1.4 523,056 - Rv0435c 0.32 -1.6
Or see this region's nucleotide sequence