Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0215c and Rv0216 are separated by 56 nucleotides Rv0216 and Rv0217c overlap by 4 nucleotides Rv0217c and Rv0218 are separated by 92 nucleotides
Rv0215c: Rv0215c - Probable acyl-CoA dehydrogenase FadE3, at 257,783 to 258,856
Rv0215c
Rv0216: Rv0216 - Double hotdog hydratase, at 258,913 to 259,926
Rv0216
Rv0217c: Rv0217c - Possible esterase LipW, at 259,923 to 260,831
Rv0217c
Rv0218: Rv0218 - Probable conserved transmembrane protein, at 260,924 to 262,252
Rv0218
Position (kb) 258
259
260 Strain fitness (log2 ratio) -1
0
1
2 at 257.926 kb on - strand, within Rv0215c at 257.991 kb on + strand, within Rv0215c at 257.992 kb on - strand, within Rv0215c at 258.531 kb on + strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.651 kb on + strand, within Rv0215c at 258.681 kb on + strand, within Rv0215c at 258.747 kb on + strand, within Rv0215c at 258.751 kb on + strand at 258.751 kb on + strand at 258.751 kb on + strand at 258.752 kb on - strand at 258.752 kb on - strand at 259.193 kb on - strand, within Rv0216 at 259.924 kb on + strand at 259.935 kb on - strand at 259.974 kb on - strand at 260.050 kb on - strand, within Rv0217c at 260.157 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.210 kb on - strand, within Rv0217c at 260.255 kb on - strand, within Rv0217c at 260.302 kb on + strand, within Rv0217c at 260.455 kb on + strand, within Rv0217c at 260.584 kb on - strand, within Rv0217c at 260.702 kb on + strand, within Rv0217c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 257,926 - Rv0215c 0.13 -0.5 257,991 + Rv0215c 0.19 -0.3 257,992 - Rv0215c 0.19 -0.7 258,531 + Rv0215c 0.70 -1.0 258,532 - Rv0215c 0.70 +0.9 258,532 - Rv0215c 0.70 +1.2 258,532 - Rv0215c 0.70 +0.3 258,651 + Rv0215c 0.81 -0.4 258,681 + Rv0215c 0.84 -0.5 258,747 + Rv0215c 0.90 +0.7 258,751 + -0.9 258,751 + +0.5 258,751 + -0.1 258,752 - +2.2 258,752 - -0.5 259,193 - Rv0216 0.28 +0.3 259,924 + +0.8 259,935 - -0.8 259,974 - +1.3 260,050 - Rv0217c 0.14 -0.0 260,157 + Rv0217c 0.26 -1.1 260,209 + Rv0217c 0.31 -0.7 260,209 + Rv0217c 0.31 +0.0 260,209 + Rv0217c 0.31 -0.5 260,210 - Rv0217c 0.32 +0.5 260,255 - Rv0217c 0.37 -0.4 260,302 + Rv0217c 0.42 -0.1 260,455 + Rv0217c 0.59 -1.1 260,584 - Rv0217c 0.73 -0.5 260,702 + Rv0217c 0.86 +1.3
Or see this region's nucleotide sequence