Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0213c and Rv0214 are separated by 113 nucleotides Rv0214 and Rv0215c are separated by 105 nucleotides
Rv0213c: Rv0213c - Possible methyltransferase (methylase), at 254,637 to 255,950
Rv0213c
Rv0214: Rv0214 - Probable fatty-acid-CoA ligase FadD4 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 256,064 to 257,677
Rv0214
Rv0215c: Rv0215c - Probable acyl-CoA dehydrogenase FadE3, at 257,783 to 258,856
Rv0215c
Position (kb) 256
257
258 Strain fitness (log2 ratio) -2
-1
0
1 at 255.089 kb on - strand, within Rv0213c at 255.272 kb on + strand, within Rv0213c at 255.273 kb on - strand, within Rv0213c at 255.295 kb on - strand, within Rv0213c at 255.311 kb on - strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.429 kb on - strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c at 255.697 kb on + strand, within Rv0213c at 255.697 kb on + strand, within Rv0213c at 255.697 kb on + strand, within Rv0213c at 255.831 kb on + strand at 255.982 kb on + strand at 255.982 kb on + strand at 256.018 kb on + strand at 256.019 kb on - strand at 256.019 kb on - strand at 256.082 kb on + strand at 256.176 kb on - strand at 256.176 kb on - strand at 256.209 kb on - strand at 256.209 kb on - strand at 256.376 kb on + strand, within Rv0214 at 256.377 kb on - strand, within Rv0214 at 256.380 kb on - strand, within Rv0214 at 256.421 kb on + strand, within Rv0214 at 256.421 kb on + strand, within Rv0214 at 256.422 kb on - strand, within Rv0214 at 256.635 kb on - strand, within Rv0214 at 256.755 kb on + strand, within Rv0214 at 256.756 kb on - strand, within Rv0214 at 256.757 kb on + strand, within Rv0214 at 256.758 kb on - strand, within Rv0214 at 256.779 kb on - strand, within Rv0214 at 257.069 kb on + strand, within Rv0214 at 257.220 kb on - strand, within Rv0214 at 257.247 kb on - strand, within Rv0214 at 257.559 kb on + strand at 257.643 kb on - strand at 257.720 kb on + strand at 257.721 kb on - strand at 257.753 kb on - strand at 257.803 kb on - strand at 257.926 kb on - strand, within Rv0215c at 257.991 kb on + strand, within Rv0215c at 257.992 kb on - strand, within Rv0215c at 258.531 kb on + strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.532 kb on - strand, within Rv0215c at 258.651 kb on + strand, within Rv0215c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 255,089 - Rv0213c 0.34 -0.0 255,272 + Rv0213c 0.48 -2.0 255,273 - Rv0213c 0.48 -0.4 255,295 - Rv0213c 0.50 -0.6 255,311 - Rv0213c 0.51 +0.8 255,381 + Rv0213c 0.57 -0.0 255,381 + Rv0213c 0.57 -2.0 255,429 - Rv0213c 0.60 -1.3 255,573 + Rv0213c 0.71 -0.6 255,573 + Rv0213c 0.71 -0.7 255,697 + Rv0213c 0.81 -0.5 255,697 + Rv0213c 0.81 -0.1 255,697 + Rv0213c 0.81 -0.8 255,831 + -0.6 255,982 + -1.0 255,982 + -0.7 256,018 + -0.5 256,019 - -1.1 256,019 - -0.1 256,082 + +1.5 256,176 - -0.5 256,176 - -0.6 256,209 - +0.2 256,209 - +1.1 256,376 + Rv0214 0.19 -2.5 256,377 - Rv0214 0.19 +0.9 256,380 - Rv0214 0.20 -0.7 256,421 + Rv0214 0.22 -0.4 256,421 + Rv0214 0.22 +1.5 256,422 - Rv0214 0.22 +1.5 256,635 - Rv0214 0.35 -0.7 256,755 + Rv0214 0.43 -0.9 256,756 - Rv0214 0.43 -0.4 256,757 + Rv0214 0.43 +0.0 256,758 - Rv0214 0.43 +0.9 256,779 - Rv0214 0.44 -0.8 257,069 + Rv0214 0.62 -1.4 257,220 - Rv0214 0.72 -0.4 257,247 - Rv0214 0.73 -0.8 257,559 + -0.6 257,643 - -0.7 257,720 + -0.4 257,721 - -0.4 257,753 - -1.1 257,803 - -0.5 257,926 - Rv0215c 0.13 -0.5 257,991 + Rv0215c 0.19 -0.3 257,992 - Rv0215c 0.19 -0.7 258,531 + Rv0215c 0.70 -1.0 258,532 - Rv0215c 0.70 +0.9 258,532 - Rv0215c 0.70 +1.2 258,532 - Rv0215c 0.70 +0.3 258,651 + Rv0215c 0.81 -0.4
Or see this region's nucleotide sequence