Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0212c and Rv0213c overlap by 4 nucleotides Rv0213c and Rv0214 are separated by 113 nucleotides
Rv0212c: Rv0212c - Possible transcriptional regulatory protein NadR (probably AsnC-family), at 253,669 to 254,640
Rv0212c
Rv0213c: Rv0213c - Possible methyltransferase (methylase), at 254,637 to 255,950
Rv0213c
Rv0214: Rv0214 - Probable fatty-acid-CoA ligase FadD4 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 256,064 to 257,677
Rv0214
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1 at 253.891 kb on + strand, within Rv0212c at 253.892 kb on - strand, within Rv0212c at 253.892 kb on - strand, within Rv0212c at 254.051 kb on - strand, within Rv0212c at 254.334 kb on - strand, within Rv0212c at 254.585 kb on + strand at 254.755 kb on - strand at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.910 kb on - strand, within Rv0213c at 254.910 kb on - strand, within Rv0213c at 254.911 kb on + strand, within Rv0213c at 254.978 kb on + strand, within Rv0213c at 254.978 kb on + strand, within Rv0213c at 254.979 kb on - strand, within Rv0213c at 255.089 kb on - strand, within Rv0213c at 255.272 kb on + strand, within Rv0213c at 255.273 kb on - strand, within Rv0213c at 255.295 kb on - strand, within Rv0213c at 255.311 kb on - strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.429 kb on - strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c at 255.697 kb on + strand, within Rv0213c at 255.697 kb on + strand, within Rv0213c at 255.697 kb on + strand, within Rv0213c at 255.831 kb on + strand at 255.982 kb on + strand at 255.982 kb on + strand at 256.018 kb on + strand at 256.019 kb on - strand at 256.019 kb on - strand at 256.082 kb on + strand at 256.176 kb on - strand at 256.176 kb on - strand at 256.209 kb on - strand at 256.209 kb on - strand at 256.376 kb on + strand, within Rv0214 at 256.377 kb on - strand, within Rv0214 at 256.380 kb on - strand, within Rv0214 at 256.421 kb on + strand, within Rv0214 at 256.421 kb on + strand, within Rv0214 at 256.422 kb on - strand, within Rv0214 at 256.635 kb on - strand, within Rv0214 at 256.755 kb on + strand, within Rv0214 at 256.756 kb on - strand, within Rv0214 at 256.757 kb on + strand, within Rv0214 at 256.758 kb on - strand, within Rv0214 at 256.779 kb on - strand, within Rv0214
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 253,891 + Rv0212c 0.23 -0.4 253,892 - Rv0212c 0.23 +0.1 253,892 - Rv0212c 0.23 -1.0 254,051 - Rv0212c 0.39 -0.4 254,334 - Rv0212c 0.68 -0.1 254,585 + -0.7 254,755 - -0.7 254,854 + Rv0213c 0.17 -0.4 254,854 + Rv0213c 0.17 -1.0 254,854 + Rv0213c 0.17 -0.2 254,854 + Rv0213c 0.17 +1.5 254,910 - Rv0213c 0.21 -0.3 254,910 - Rv0213c 0.21 -0.0 254,911 + Rv0213c 0.21 -1.6 254,978 + Rv0213c 0.26 +1.0 254,978 + Rv0213c 0.26 -0.2 254,979 - Rv0213c 0.26 -0.2 255,089 - Rv0213c 0.34 -0.0 255,272 + Rv0213c 0.48 -2.0 255,273 - Rv0213c 0.48 -0.4 255,295 - Rv0213c 0.50 -0.6 255,311 - Rv0213c 0.51 +0.8 255,381 + Rv0213c 0.57 -0.0 255,381 + Rv0213c 0.57 -2.0 255,429 - Rv0213c 0.60 -1.3 255,573 + Rv0213c 0.71 -0.6 255,573 + Rv0213c 0.71 -0.7 255,697 + Rv0213c 0.81 -0.5 255,697 + Rv0213c 0.81 -0.1 255,697 + Rv0213c 0.81 -0.8 255,831 + -0.6 255,982 + -1.0 255,982 + -0.7 256,018 + -0.5 256,019 - -1.1 256,019 - -0.1 256,082 + +1.5 256,176 - -0.5 256,176 - -0.6 256,209 - +0.2 256,209 - +1.1 256,376 + Rv0214 0.19 -2.5 256,377 - Rv0214 0.19 +0.9 256,380 - Rv0214 0.20 -0.7 256,421 + Rv0214 0.22 -0.4 256,421 + Rv0214 0.22 +1.5 256,422 - Rv0214 0.22 +1.5 256,635 - Rv0214 0.35 -0.7 256,755 + Rv0214 0.43 -0.9 256,756 - Rv0214 0.43 -0.4 256,757 + Rv0214 0.43 +0.0 256,758 - Rv0214 0.43 +0.9 256,779 - Rv0214 0.44 -0.8
Or see this region's nucleotide sequence