Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0167 and Rv0168 are separated by 1 nucleotides Rv0168 and Rv0169 are separated by 4 nucleotides Rv0169 and Rv0170 overlap by 4 nucleotides
Rv0167: Rv0167 - Conserved integral membrane protein YrbE1A, at 196,861 to 197,658
Rv0167
Rv0168: Rv0168 - Conserved integral membrane protein YrbE1B, at 197,660 to 198,529
Rv0168
Rv0169: Rv0169 - Mce-family protein Mce1A, at 198,534 to 199,898
Rv0169
Rv0170: Rv0170 - Mce-family protein Mce1B, at 199,895 to 200,935
Rv0170
Position (kb) 198
199
200 Strain fitness (log2 ratio) -1
0
1
2 at 197.721 kb on - strand at 197.721 kb on - strand at 197.816 kb on + strand, within Rv0168 at 198.218 kb on - strand, within Rv0168 at 198.257 kb on + strand, within Rv0168 at 198.278 kb on + strand, within Rv0168 at 198.377 kb on + strand, within Rv0168 at 198.378 kb on - strand, within Rv0168 at 198.378 kb on - strand, within Rv0168 at 198.387 kb on - strand, within Rv0168 at 198.577 kb on - strand at 198.632 kb on - strand at 198.632 kb on - strand at 198.634 kb on - strand at 198.730 kb on - strand, within Rv0169 at 198.826 kb on - strand, within Rv0169 at 198.826 kb on - strand, within Rv0169 at 198.891 kb on + strand, within Rv0169 at 198.892 kb on - strand, within Rv0169 at 199.351 kb on - strand, within Rv0169 at 199.404 kb on + strand, within Rv0169 at 199.404 kb on + strand, within Rv0169 at 199.405 kb on - strand, within Rv0169 at 199.405 kb on - strand, within Rv0169 at 199.441 kb on - strand, within Rv0169 at 199.460 kb on + strand, within Rv0169 at 199.529 kb on + strand, within Rv0169 at 199.530 kb on - strand, within Rv0169 at 199.530 kb on - strand, within Rv0169 at 199.679 kb on + strand, within Rv0169 at 199.680 kb on - strand, within Rv0169 at 199.680 kb on - strand, within Rv0169 at 199.684 kb on - strand, within Rv0169 at 199.816 kb on - strand at 199.843 kb on - strand at 199.881 kb on - strand at 200.002 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.097 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.162 kb on + strand, within Rv0170 at 200.421 kb on + strand, within Rv0170 at 200.563 kb on + strand, within Rv0170 at 200.702 kb on + strand, within Rv0170 at 200.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 197,721 - -0.1 197,721 - +0.9 197,816 + Rv0168 0.18 -0.5 198,218 - Rv0168 0.64 +0.2 198,257 + Rv0168 0.69 +0.9 198,278 + Rv0168 0.71 -0.3 198,377 + Rv0168 0.82 +1.5 198,378 - Rv0168 0.83 +1.3 198,378 - Rv0168 0.83 +1.7 198,387 - Rv0168 0.84 +0.9 198,577 - +0.6 198,632 - +0.5 198,632 - +0.5 198,634 - +0.0 198,730 - Rv0169 0.14 +2.2 198,826 - Rv0169 0.21 -1.3 198,826 - Rv0169 0.21 -0.2 198,891 + Rv0169 0.26 +0.8 198,892 - Rv0169 0.26 +0.2 199,351 - Rv0169 0.60 +0.0 199,404 + Rv0169 0.64 +0.2 199,404 + Rv0169 0.64 +1.0 199,405 - Rv0169 0.64 +0.6 199,405 - Rv0169 0.64 +0.3 199,441 - Rv0169 0.66 -0.7 199,460 + Rv0169 0.68 +2.6 199,529 + Rv0169 0.73 +1.0 199,530 - Rv0169 0.73 +0.6 199,530 - Rv0169 0.73 +0.8 199,679 + Rv0169 0.84 +1.2 199,680 - Rv0169 0.84 +0.4 199,680 - Rv0169 0.84 -0.5 199,684 - Rv0169 0.84 +1.5 199,816 - +1.0 199,843 - +0.7 199,881 - +1.5 200,002 + Rv0170 0.10 +0.6 200,097 + Rv0170 0.19 +0.2 200,097 + Rv0170 0.19 +1.2 200,162 + Rv0170 0.26 +1.0 200,162 + Rv0170 0.26 +0.4 200,421 + Rv0170 0.51 +1.3 200,563 + Rv0170 0.64 -0.5 200,702 + Rv0170 0.78 +0.5 200,832 - +0.2
Or see this region's nucleotide sequence