Experiment: 7H9 with Ciprofloxacin Hydrochloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0159c and Rv0160c are separated by 91 nucleotides Rv0160c and Rv0161 are separated by 167 nucleotides
Rv0159c: Rv0159c - PE family protein PE3, at 187,433 to 188,839
Rv0159c
Rv0160c: Rv0160c - PE family protein PE4, at 188,931 to 190,439
Rv0160c
Rv0161: Rv0161 - Possible oxidoreductase, at 190,607 to 191,956
Rv0161
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.964 kb on - strand, within Rv0159c at 187.964 kb on - strand, within Rv0159c at 187.992 kb on + strand, within Rv0159c at 187.993 kb on - strand, within Rv0159c at 188.001 kb on + strand, within Rv0159c at 188.001 kb on + strand, within Rv0159c at 188.001 kb on + strand, within Rv0159c at 188.013 kb on + strand, within Rv0159c at 188.013 kb on + strand, within Rv0159c at 188.013 kb on + strand, within Rv0159c at 188.013 kb on + strand, within Rv0159c at 188.014 kb on - strand, within Rv0159c at 188.014 kb on - strand, within Rv0159c at 188.014 kb on - strand, within Rv0159c at 188.020 kb on - strand, within Rv0159c at 188.020 kb on - strand, within Rv0159c at 188.020 kb on - strand, within Rv0159c at 188.020 kb on - strand, within Rv0159c at 188.082 kb on + strand, within Rv0159c at 188.094 kb on + strand, within Rv0159c at 188.094 kb on + strand, within Rv0159c at 188.094 kb on + strand, within Rv0159c at 188.128 kb on + strand, within Rv0159c at 188.129 kb on - strand, within Rv0159c at 188.131 kb on + strand, within Rv0159c at 188.132 kb on - strand, within Rv0159c at 188.191 kb on + strand, within Rv0159c at 188.202 kb on - strand, within Rv0159c at 188.367 kb on + strand, within Rv0159c at 188.443 kb on + strand, within Rv0159c at 188.444 kb on - strand, within Rv0159c at 188.548 kb on + strand, within Rv0159c at 188.548 kb on + strand, within Rv0159c at 188.548 kb on + strand, within Rv0159c at 188.549 kb on - strand, within Rv0159c at 188.642 kb on + strand, within Rv0159c at 188.833 kb on - strand at 188.833 kb on - strand at 188.995 kb on - strand at 188.995 kb on - strand at 188.995 kb on - strand at 189.023 kb on - strand at 189.061 kb on + strand at 189.061 kb on + strand at 189.061 kb on + strand at 189.062 kb on - strand at 189.062 kb on - strand at 189.062 kb on - strand at 189.062 kb on - strand at 189.160 kb on + strand, within Rv0160c at 189.220 kb on + strand, within Rv0160c at 189.221 kb on - strand, within Rv0160c at 189.248 kb on - strand, within Rv0160c at 189.364 kb on + strand, within Rv0160c at 189.364 kb on + strand, within Rv0160c at 189.364 kb on + strand, within Rv0160c at 189.364 kb on + strand, within Rv0160c at 189.364 kb on + strand, within Rv0160c at 189.364 kb on + strand, within Rv0160c at 189.364 kb on + strand, within Rv0160c at 189.365 kb on - strand, within Rv0160c at 189.365 kb on - strand, within Rv0160c at 189.365 kb on - strand, within Rv0160c at 189.365 kb on - strand, within Rv0160c at 189.365 kb on - strand, within Rv0160c at 189.365 kb on - strand, within Rv0160c at 189.368 kb on - strand, within Rv0160c at 189.384 kb on - strand, within Rv0160c at 189.386 kb on - strand, within Rv0160c at 189.445 kb on + strand, within Rv0160c at 189.460 kb on + strand, within Rv0160c at 189.460 kb on + strand, within Rv0160c at 189.461 kb on - strand, within Rv0160c at 189.547 kb on + strand, within Rv0160c at 189.547 kb on + strand, within Rv0160c at 189.570 kb on - strand, within Rv0160c at 189.617 kb on - strand, within Rv0160c at 189.617 kb on - strand, within Rv0160c at 189.686 kb on + strand, within Rv0160c at 189.731 kb on - strand, within Rv0160c at 189.731 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.181 kb on - strand, within Rv0160c at 190.328 kb on + strand at 190.328 kb on + strand at 190.328 kb on + strand at 190.328 kb on + strand at 190.329 kb on - strand at 190.329 kb on - strand at 190.506 kb on - strand at 190.509 kb on - strand at 190.509 kb on - strand at 190.512 kb on + strand at 190.512 kb on + strand at 190.513 kb on - strand at 190.516 kb on + strand at 190.516 kb on + strand at 190.526 kb on - strand at 190.526 kb on - strand at 190.543 kb on - strand at 190.582 kb on + strand at 190.594 kb on + strand at 190.594 kb on + strand at 190.595 kb on - strand at 190.597 kb on - strand at 190.611 kb on + strand at 190.787 kb on + strand, within Rv0161 at 190.788 kb on - strand, within Rv0161 at 191.367 kb on + strand, within Rv0161
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ciprofloxacin Hydrochloride 0.001 mM remove 187,964 - Rv0159c 0.38 -0.6 187,964 - Rv0159c 0.38 -0.2 187,992 + Rv0159c 0.40 -0.6 187,993 - Rv0159c 0.40 +0.0 188,001 + Rv0159c 0.40 +0.2 188,001 + Rv0159c 0.40 -0.1 188,001 + Rv0159c 0.40 -0.6 188,013 + Rv0159c 0.41 +0.2 188,013 + Rv0159c 0.41 +1.5 188,013 + Rv0159c 0.41 -1.7 188,013 + Rv0159c 0.41 -0.7 188,014 - Rv0159c 0.41 -0.5 188,014 - Rv0159c 0.41 +1.2 188,014 - Rv0159c 0.41 -0.0 188,020 - Rv0159c 0.42 +1.0 188,020 - Rv0159c 0.42 +0.4 188,020 - Rv0159c 0.42 -0.5 188,020 - Rv0159c 0.42 -0.0 188,082 + Rv0159c 0.46 +0.5 188,094 + Rv0159c 0.47 -0.0 188,094 + Rv0159c 0.47 -0.8 188,094 + Rv0159c 0.47 +0.4 188,128 + Rv0159c 0.49 -0.6 188,129 - Rv0159c 0.49 +0.1 188,131 + Rv0159c 0.50 -0.2 188,132 - Rv0159c 0.50 -0.5 188,191 + Rv0159c 0.54 +0.6 188,202 - Rv0159c 0.55 -0.3 188,367 + Rv0159c 0.66 +0.6 188,443 + Rv0159c 0.72 -0.6 188,444 - Rv0159c 0.72 -0.0 188,548 + Rv0159c 0.79 -0.5 188,548 + Rv0159c 0.79 +1.3 188,548 + Rv0159c 0.79 +0.7 188,549 - Rv0159c 0.79 -0.7 188,642 + Rv0159c 0.86 -1.4 188,833 - -0.1 188,833 - +1.0 188,995 - -2.1 188,995 - -0.6 188,995 - -0.2 189,023 - -0.2 189,061 + -0.4 189,061 + -0.9 189,061 + -0.2 189,062 - -0.2 189,062 - -1.1 189,062 - +0.0 189,062 - -0.1 189,160 + Rv0160c 0.15 +1.5 189,220 + Rv0160c 0.19 -2.2 189,221 - Rv0160c 0.19 -0.8 189,248 - Rv0160c 0.21 -0.5 189,364 + Rv0160c 0.29 -0.0 189,364 + Rv0160c 0.29 -0.6 189,364 + Rv0160c 0.29 +0.2 189,364 + Rv0160c 0.29 -2.0 189,364 + Rv0160c 0.29 -0.3 189,364 + Rv0160c 0.29 -0.4 189,364 + Rv0160c 0.29 -0.8 189,365 - Rv0160c 0.29 -0.7 189,365 - Rv0160c 0.29 -0.6 189,365 - Rv0160c 0.29 +0.5 189,365 - Rv0160c 0.29 -0.8 189,365 - Rv0160c 0.29 -1.5 189,365 - Rv0160c 0.29 -0.6 189,368 - Rv0160c 0.29 +0.5 189,384 - Rv0160c 0.30 -1.6 189,386 - Rv0160c 0.30 -0.1 189,445 + Rv0160c 0.34 -0.3 189,460 + Rv0160c 0.35 +1.2 189,460 + Rv0160c 0.35 +1.1 189,461 - Rv0160c 0.35 -0.4 189,547 + Rv0160c 0.41 -0.5 189,547 + Rv0160c 0.41 -0.3 189,570 - Rv0160c 0.42 -0.4 189,617 - Rv0160c 0.45 +0.1 189,617 - Rv0160c 0.45 -1.0 189,686 + Rv0160c 0.50 -0.4 189,731 - Rv0160c 0.53 +0.4 189,731 - Rv0160c 0.53 -0.4 190,128 - Rv0160c 0.79 -1.2 190,128 - Rv0160c 0.79 -1.1 190,128 - Rv0160c 0.79 -0.5 190,128 - Rv0160c 0.79 -0.3 190,181 - Rv0160c 0.83 -0.6 190,328 + +1.5 190,328 + +0.5 190,328 + -0.6 190,328 + -1.8 190,329 - -0.7 190,329 - +1.5 190,506 - -0.3 190,509 - +1.1 190,509 - -0.1 190,512 + -0.9 190,512 + +0.5 190,513 - +0.4 190,516 + +0.0 190,516 + -0.2 190,526 - +0.5 190,526 - -0.2 190,543 - -0.3 190,582 + -1.8 190,594 + +2.7 190,594 + -2.5 190,595 - -0.4 190,597 - +2.4 190,611 + -0.5 190,787 + Rv0161 0.13 -0.8 190,788 - Rv0161 0.13 -0.6 191,367 + Rv0161 0.56 -0.1
Or see this region's nucleotide sequence