Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04545

Experiment: McCas-formate low carbon steel planktonic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04540 and MMJJ_RS04545 are separated by 112 nucleotidesMMJJ_RS04545 and MMJJ_RS04550 are separated by 1 nucleotidesMMJJ_RS04550 and MMJJ_RS04555 are separated by 0 nucleotides MMJJ_RS04540: MMJJ_RS04540 - site-2 protease family protein, at 847,122 to 848,249 _RS04540 MMJJ_RS04545: MMJJ_RS04545 - PadR family transcriptional regulator, at 848,362 to 848,820 _RS04545 MMJJ_RS04550: MMJJ_RS04550 - ATP-binding cassette domain-containing protein, at 848,822 to 849,790 _RS04550 MMJJ_RS04555: MMJJ_RS04555 - MATE family efflux transporter, at 849,791 to 851,173 _RS04555 Position (kb) 848 849Strain fitness (log2 ratio) -1 0 1at 847.363 kb on - strand, within MMJJ_RS04540at 847.374 kb on - strand, within MMJJ_RS04540at 847.375 kb on + strand, within MMJJ_RS04540at 847.379 kb on - strand, within MMJJ_RS04540at 847.379 kb on - strand, within MMJJ_RS04540at 847.381 kb on - strand, within MMJJ_RS04540at 847.382 kb on + strand, within MMJJ_RS04540at 847.382 kb on + strand, within MMJJ_RS04540at 847.382 kb on + strand, within MMJJ_RS04540at 847.441 kb on + strand, within MMJJ_RS04540at 847.441 kb on + strand, within MMJJ_RS04540at 847.444 kb on - strand, within MMJJ_RS04540at 847.444 kb on - strand, within MMJJ_RS04540at 847.445 kb on + strand, within MMJJ_RS04540at 847.445 kb on + strand, within MMJJ_RS04540at 847.445 kb on + strand, within MMJJ_RS04540at 847.445 kb on + strand, within MMJJ_RS04540at 847.445 kb on + strand, within MMJJ_RS04540at 847.463 kb on - strand, within MMJJ_RS04540at 847.503 kb on - strand, within MMJJ_RS04540at 847.503 kb on - strand, within MMJJ_RS04540at 847.503 kb on - strand, within MMJJ_RS04540at 847.503 kb on - strand, within MMJJ_RS04540at 847.503 kb on - strand, within MMJJ_RS04540at 847.504 kb on + strandat 847.504 kb on + strand, within MMJJ_RS04540at 847.565 kb on + strand, within MMJJ_RS04540at 847.569 kb on - strand, within MMJJ_RS04540at 847.570 kb on + strand, within MMJJ_RS04540at 847.604 kb on - strand, within MMJJ_RS04540at 847.655 kb on + strand, within MMJJ_RS04540at 847.671 kb on - strandat 847.690 kb on + strand, within MMJJ_RS04540at 847.690 kb on + strand, within MMJJ_RS04540at 847.767 kb on - strand, within MMJJ_RS04540at 847.872 kb on + strand, within MMJJ_RS04540at 847.884 kb on - strand, within MMJJ_RS04540at 847.885 kb on + strand, within MMJJ_RS04540at 847.885 kb on + strand, within MMJJ_RS04540at 847.916 kb on - strand, within MMJJ_RS04540at 847.917 kb on + strand, within MMJJ_RS04540at 847.994 kb on - strand, within MMJJ_RS04540at 847.995 kb on + strand, within MMJJ_RS04540at 848.064 kb on - strand, within MMJJ_RS04540at 848.065 kb on + strand, within MMJJ_RS04540at 848.066 kb on - strand, within MMJJ_RS04540at 848.067 kb on + strand, within MMJJ_RS04540at 848.067 kb on + strand, within MMJJ_RS04540at 848.089 kb on + strand, within MMJJ_RS04540at 848.092 kb on + strand, within MMJJ_RS04540at 848.137 kb on - strandat 848.185 kb on + strandat 848.192 kb on + strandat 848.211 kb on - strandat 848.241 kb on + strandat 848.267 kb on - strandat 848.267 kb on - strandat 848.267 kb on - strandat 848.272 kb on + strandat 848.272 kb on + strandat 848.282 kb on - strandat 848.282 kb on - strandat 848.304 kb on + strandat 848.308 kb on + strandat 848.316 kb on + strandat 848.346 kb on - strandat 848.360 kb on - strandat 848.374 kb on + strandat 848.374 kb on + strandat 848.382 kb on + strandat 848.405 kb on - strandat 848.606 kb on - strand, within MMJJ_RS04545at 848.623 kb on + strand, within MMJJ_RS04545at 848.662 kb on - strand, within MMJJ_RS04545at 848.708 kb on - strand, within MMJJ_RS04545at 848.819 kb on + strandat 848.882 kb on + strandat 848.893 kb on - strandat 848.958 kb on - strand, within MMJJ_RS04550at 848.962 kb on - strand, within MMJJ_RS04550at 848.964 kb on - strand, within MMJJ_RS04550at 848.964 kb on - strand, within MMJJ_RS04550at 848.965 kb on + strand, within MMJJ_RS04550at 848.965 kb on + strand, within MMJJ_RS04550at 848.968 kb on - strand, within MMJJ_RS04550at 848.968 kb on - strand, within MMJJ_RS04550at 848.969 kb on + strand, within MMJJ_RS04550at 848.995 kb on - strand, within MMJJ_RS04550at 849.026 kb on + strand, within MMJJ_RS04550at 849.076 kb on - strand, within MMJJ_RS04550at 849.131 kb on - strand, within MMJJ_RS04550at 849.137 kb on - strand, within MMJJ_RS04550at 849.138 kb on + strand, within MMJJ_RS04550at 849.138 kb on + strand, within MMJJ_RS04550at 849.187 kb on + strand, within MMJJ_RS04550at 849.203 kb on + strand, within MMJJ_RS04550at 849.209 kb on + strand, within MMJJ_RS04550at 849.209 kb on + strand, within MMJJ_RS04550at 849.267 kb on - strand, within MMJJ_RS04550at 849.267 kb on - strand, within MMJJ_RS04550at 849.267 kb on - strand, within MMJJ_RS04550at 849.268 kb on + strand, within MMJJ_RS04550at 849.268 kb on + strand, within MMJJ_RS04550at 849.348 kb on + strand, within MMJJ_RS04550at 849.348 kb on + strand, within MMJJ_RS04550at 849.352 kb on - strand, within MMJJ_RS04550at 849.353 kb on + strand, within MMJJ_RS04550at 849.384 kb on - strand, within MMJJ_RS04550at 849.390 kb on - strand, within MMJJ_RS04550at 849.391 kb on + strand, within MMJJ_RS04550at 849.391 kb on + strand, within MMJJ_RS04550at 849.402 kb on + strand, within MMJJ_RS04550at 849.586 kb on + strand, within MMJJ_RS04550at 849.590 kb on - strand, within MMJJ_RS04550at 849.590 kb on - strand, within MMJJ_RS04550at 849.591 kb on + strand, within MMJJ_RS04550at 849.675 kb on + strand, within MMJJ_RS04550at 849.677 kb on + strand, within MMJJ_RS04550

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate low carbon steel planktonic
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847,363 - MMJJ_RS04540 0.21 -0.3
847,374 - MMJJ_RS04540 0.22 +0.5
847,375 + MMJJ_RS04540 0.22 +0.1
847,379 - MMJJ_RS04540 0.23 -0.1
847,379 - MMJJ_RS04540 0.23 -1.1
847,381 - MMJJ_RS04540 0.23 -0.1
847,382 + MMJJ_RS04540 0.23 +1.0
847,382 + MMJJ_RS04540 0.23 +0.0
847,382 + MMJJ_RS04540 0.23 -0.2
847,441 + MMJJ_RS04540 0.28 +0.4
847,441 + MMJJ_RS04540 0.28 +0.4
847,444 - MMJJ_RS04540 0.29 -0.7
847,444 - MMJJ_RS04540 0.29 +0.1
847,445 + MMJJ_RS04540 0.29 +0.9
847,445 + MMJJ_RS04540 0.29 -0.5
847,445 + MMJJ_RS04540 0.29 +0.1
847,445 + MMJJ_RS04540 0.29 -0.0
847,445 + MMJJ_RS04540 0.29 -0.2
847,463 - MMJJ_RS04540 0.30 -0.1
847,503 - MMJJ_RS04540 0.34 -0.2
847,503 - MMJJ_RS04540 0.34 +0.4
847,503 - MMJJ_RS04540 0.34 -0.2
847,503 - MMJJ_RS04540 0.34 +0.1
847,503 - MMJJ_RS04540 0.34 +0.2
847,504 + -0.1
847,504 + MMJJ_RS04540 0.34 -0.2
847,565 + MMJJ_RS04540 0.39 -0.2
847,569 - MMJJ_RS04540 0.40 +0.1
847,570 + MMJJ_RS04540 0.40 +0.0
847,604 - MMJJ_RS04540 0.43 -0.0
847,655 + MMJJ_RS04540 0.47 -0.1
847,671 - +1.1
847,690 + MMJJ_RS04540 0.50 +0.4
847,690 + MMJJ_RS04540 0.50 -0.3
847,767 - MMJJ_RS04540 0.57 -0.3
847,872 + MMJJ_RS04540 0.66 +0.4
847,884 - MMJJ_RS04540 0.68 +0.0
847,885 + MMJJ_RS04540 0.68 +0.2
847,885 + MMJJ_RS04540 0.68 +0.0
847,916 - MMJJ_RS04540 0.70 +0.2
847,917 + MMJJ_RS04540 0.70 +0.2
847,994 - MMJJ_RS04540 0.77 +0.1
847,995 + MMJJ_RS04540 0.77 +0.2
848,064 - MMJJ_RS04540 0.84 -0.5
848,065 + MMJJ_RS04540 0.84 -0.1
848,066 - MMJJ_RS04540 0.84 +0.2
848,067 + MMJJ_RS04540 0.84 +0.2
848,067 + MMJJ_RS04540 0.84 -0.0
848,089 + MMJJ_RS04540 0.86 -0.4
848,092 + MMJJ_RS04540 0.86 +0.1
848,137 - -0.1
848,185 + -0.2
848,192 + +0.1
848,211 - -0.1
848,241 + -0.0
848,267 - +0.2
848,267 - -0.3
848,267 - -0.2
848,272 + +0.5
848,272 + -0.1
848,282 - -0.0
848,282 - +0.2
848,304 + +0.3
848,308 + +0.1
848,316 + -0.1
848,346 - -0.1
848,360 - -0.0
848,374 + -0.2
848,374 + -0.2
848,382 + -0.0
848,405 - +0.3
848,606 - MMJJ_RS04545 0.53 +0.2
848,623 + MMJJ_RS04545 0.57 -0.1
848,662 - MMJJ_RS04545 0.65 -1.0
848,708 - MMJJ_RS04545 0.75 -0.2
848,819 + -0.2
848,882 + -0.3
848,893 - -0.1
848,958 - MMJJ_RS04550 0.14 -0.5
848,962 - MMJJ_RS04550 0.14 +0.2
848,964 - MMJJ_RS04550 0.15 -0.6
848,964 - MMJJ_RS04550 0.15 +0.0
848,965 + MMJJ_RS04550 0.15 +1.1
848,965 + MMJJ_RS04550 0.15 +0.2
848,968 - MMJJ_RS04550 0.15 +0.4
848,968 - MMJJ_RS04550 0.15 +0.7
848,969 + MMJJ_RS04550 0.15 -0.4
848,995 - MMJJ_RS04550 0.18 +0.7
849,026 + MMJJ_RS04550 0.21 -0.6
849,076 - MMJJ_RS04550 0.26 -0.2
849,131 - MMJJ_RS04550 0.32 +0.0
849,137 - MMJJ_RS04550 0.33 -0.0
849,138 + MMJJ_RS04550 0.33 -0.3
849,138 + MMJJ_RS04550 0.33 +0.2
849,187 + MMJJ_RS04550 0.38 +0.2
849,203 + MMJJ_RS04550 0.39 +0.1
849,209 + MMJJ_RS04550 0.40 -0.4
849,209 + MMJJ_RS04550 0.40 +1.1
849,267 - MMJJ_RS04550 0.46 +0.2
849,267 - MMJJ_RS04550 0.46 -0.2
849,267 - MMJJ_RS04550 0.46 -0.2
849,268 + MMJJ_RS04550 0.46 -0.1
849,268 + MMJJ_RS04550 0.46 +0.8
849,348 + MMJJ_RS04550 0.54 +0.1
849,348 + MMJJ_RS04550 0.54 -0.4
849,352 - MMJJ_RS04550 0.55 +0.1
849,353 + MMJJ_RS04550 0.55 -0.9
849,384 - MMJJ_RS04550 0.58 -0.0
849,390 - MMJJ_RS04550 0.59 -0.6
849,391 + MMJJ_RS04550 0.59 -0.1
849,391 + MMJJ_RS04550 0.59 -0.2
849,402 + MMJJ_RS04550 0.60 -0.1
849,586 + MMJJ_RS04550 0.79 +0.5
849,590 - MMJJ_RS04550 0.79 +0.0
849,590 - MMJJ_RS04550 0.79 -0.0
849,591 + MMJJ_RS04550 0.79 +0.3
849,675 + MMJJ_RS04550 0.88 +1.7
849,677 + MMJJ_RS04550 0.88 -0.2

Or see this region's nucleotide sequence