Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04340

Experiment: McCas-formate low carbon steel planktonic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04335 and MMJJ_RS04340 are separated by 12 nucleotidesMMJJ_RS04340 and MMJJ_RS04345 are separated by 1 nucleotidesMMJJ_RS04345 and MMJJ_RS04350 overlap by 8 nucleotidesMMJJ_RS04350 and MMJJ_RS09405 are separated by 18 nucleotides MMJJ_RS04335: MMJJ_RS04335 - minichromosome maintenance protein MCM, at 809,188 to 811,212 _RS04335 MMJJ_RS04340: MMJJ_RS04340 - hypothetical protein, at 811,225 to 811,440 _RS04340 MMJJ_RS04345: MMJJ_RS04345 - DUF2080 family transposase-associated protein, at 811,442 to 811,666 _RS04345 MMJJ_RS04350: MMJJ_RS04350 - hypothetical protein, at 811,659 to 812,162 _RS04350 MMJJ_RS09405: MMJJ_RS09405 - hypothetical protein, at 812,181 to 812,360 _RS09405 Position (kb) 811 812Strain fitness (log2 ratio) -2 -1 0 1at 810.457 kb on - strand, within MMJJ_RS04335at 810.457 kb on - strand, within MMJJ_RS04335at 810.457 kb on - strand, within MMJJ_RS04335at 810.458 kb on + strand, within MMJJ_RS04335at 810.604 kb on - strand, within MMJJ_RS04335at 810.604 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.686 kb on - strand, within MMJJ_RS04335at 810.686 kb on - strand, within MMJJ_RS04335at 810.687 kb on + strand, within MMJJ_RS04335at 810.714 kb on - strand, within MMJJ_RS04335at 810.715 kb on + strand, within MMJJ_RS04335at 810.810 kb on + strand, within MMJJ_RS04335at 810.810 kb on + strand, within MMJJ_RS04335at 810.856 kb on - strand, within MMJJ_RS04335at 810.856 kb on - strand, within MMJJ_RS04335at 810.857 kb on + strand, within MMJJ_RS04335at 811.016 kb on - strandat 811.065 kb on + strandat 811.136 kb on + strandat 811.186 kb on - strandat 811.276 kb on + strand, within MMJJ_RS04340at 811.300 kb on - strand, within MMJJ_RS04340at 811.300 kb on - strand, within MMJJ_RS04340at 811.301 kb on + strand, within MMJJ_RS04340at 811.321 kb on + strand, within MMJJ_RS04340at 811.333 kb on + strand, within MMJJ_RS04340at 811.407 kb on - strand, within MMJJ_RS04340at 811.571 kb on - strand, within MMJJ_RS04345at 811.582 kb on - strand, within MMJJ_RS04345at 811.582 kb on - strand, within MMJJ_RS04345at 811.583 kb on + strand, within MMJJ_RS04345at 811.583 kb on + strand, within MMJJ_RS04345at 811.635 kb on + strand, within MMJJ_RS04345at 811.655 kb on - strandat 811.656 kb on + strandat 811.788 kb on - strand, within MMJJ_RS04350at 811.789 kb on + strand, within MMJJ_RS04350at 811.789 kb on + strand, within MMJJ_RS04350at 811.932 kb on + strand, within MMJJ_RS04350at 811.932 kb on + strand, within MMJJ_RS04350at 811.965 kb on - strand, within MMJJ_RS04350at 811.966 kb on + strand, within MMJJ_RS04350at 811.966 kb on + strand, within MMJJ_RS04350at 812.059 kb on - strand, within MMJJ_RS04350at 812.076 kb on - strand, within MMJJ_RS04350at 812.076 kb on - strand, within MMJJ_RS04350at 812.089 kb on + strand, within MMJJ_RS04350at 812.124 kb on + strandat 812.127 kb on - strandat 812.127 kb on - strandat 812.128 kb on + strandat 812.163 kb on + strandat 812.180 kb on + strandat 812.183 kb on + strandat 812.203 kb on + strand, within MMJJ_RS09405at 812.221 kb on + strand, within MMJJ_RS09405at 812.279 kb on - strand, within MMJJ_RS09405at 812.280 kb on + strand, within MMJJ_RS09405at 812.313 kb on - strand, within MMJJ_RS09405at 812.314 kb on + strand, within MMJJ_RS09405at 812.314 kb on + strand, within MMJJ_RS09405at 812.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate low carbon steel planktonic
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810,457 - MMJJ_RS04335 0.63 -0.5
810,457 - MMJJ_RS04335 0.63 -0.0
810,457 - MMJJ_RS04335 0.63 -0.5
810,458 + MMJJ_RS04335 0.63 +0.4
810,604 - MMJJ_RS04335 0.70 -0.1
810,604 - MMJJ_RS04335 0.70 +0.4
810,682 - MMJJ_RS04335 0.74 +0.3
810,682 - MMJJ_RS04335 0.74 -0.0
810,682 - MMJJ_RS04335 0.74 +0.1
810,682 - MMJJ_RS04335 0.74 +0.0
810,683 + MMJJ_RS04335 0.74 +1.1
810,683 + MMJJ_RS04335 0.74 -0.1
810,683 + MMJJ_RS04335 0.74 -0.7
810,683 + MMJJ_RS04335 0.74 +0.6
810,686 - MMJJ_RS04335 0.74 -0.4
810,686 - MMJJ_RS04335 0.74 +0.3
810,687 + MMJJ_RS04335 0.74 +0.3
810,714 - MMJJ_RS04335 0.75 +0.4
810,715 + MMJJ_RS04335 0.75 -0.0
810,810 + MMJJ_RS04335 0.80 -0.4
810,810 + MMJJ_RS04335 0.80 -0.7
810,856 - MMJJ_RS04335 0.82 +0.1
810,856 - MMJJ_RS04335 0.82 +0.1
810,857 + MMJJ_RS04335 0.82 -0.0
811,016 - -0.6
811,065 + +0.1
811,136 + -0.4
811,186 - -0.3
811,276 + MMJJ_RS04340 0.24 -0.0
811,300 - MMJJ_RS04340 0.35 +0.1
811,300 - MMJJ_RS04340 0.35 -0.2
811,301 + MMJJ_RS04340 0.35 -1.2
811,321 + MMJJ_RS04340 0.44 -0.2
811,333 + MMJJ_RS04340 0.50 -0.0
811,407 - MMJJ_RS04340 0.84 -0.1
811,571 - MMJJ_RS04345 0.57 -0.1
811,582 - MMJJ_RS04345 0.62 -0.0
811,582 - MMJJ_RS04345 0.62 -0.1
811,583 + MMJJ_RS04345 0.63 -0.2
811,583 + MMJJ_RS04345 0.63 +0.4
811,635 + MMJJ_RS04345 0.86 +0.2
811,655 - -0.0
811,656 + +0.3
811,788 - MMJJ_RS04350 0.26 -1.0
811,789 + MMJJ_RS04350 0.26 -0.3
811,789 + MMJJ_RS04350 0.26 -0.0
811,932 + MMJJ_RS04350 0.54 +0.3
811,932 + MMJJ_RS04350 0.54 +0.1
811,965 - MMJJ_RS04350 0.61 +0.3
811,966 + MMJJ_RS04350 0.61 +0.1
811,966 + MMJJ_RS04350 0.61 +0.2
812,059 - MMJJ_RS04350 0.79 -0.2
812,076 - MMJJ_RS04350 0.83 +0.8
812,076 - MMJJ_RS04350 0.83 +0.1
812,089 + MMJJ_RS04350 0.85 +0.1
812,124 + -0.2
812,127 - -0.1
812,127 - +0.3
812,128 + -0.2
812,163 + +0.3
812,180 + -0.2
812,183 + -0.5
812,203 + MMJJ_RS09405 0.12 +0.1
812,221 + MMJJ_RS09405 0.22 -0.2
812,279 - MMJJ_RS09405 0.54 +0.1
812,280 + MMJJ_RS09405 0.55 -0.3
812,313 - MMJJ_RS09405 0.73 +0.3
812,314 + MMJJ_RS09405 0.74 -0.4
812,314 + MMJJ_RS09405 0.74 -2.2
812,354 + +0.6

Or see this region's nucleotide sequence