Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13455

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS13450 and ABIE51_RS13455 are separated by 276 nucleotidesABIE51_RS13455 and ABIE51_RS13460 overlap by 16 nucleotides ABIE51_RS13450: ABIE51_RS13450 - RNA polymerase-binding protein DksA, at 2,901,368 to 2,902,471 _RS13450 ABIE51_RS13455: ABIE51_RS13455 - membrane protein insertion efficiency factor YidD, at 2,902,748 to 2,902,996 _RS13455 ABIE51_RS13460: ABIE51_RS13460 - dihydroorotase, at 2,902,981 to 2,904,327 _RS13460 Position (kb) 2902 2903Strain fitness (log2 ratio) -2 -1 0 1at 2902.686 kb on + strandat 2902.686 kb on + strandat 2902.686 kb on + strandat 2902.686 kb on + strandat 2902.686 kb on + strandat 2902.687 kb on - strandat 2902.687 kb on - strandat 2902.687 kb on - strandat 2902.687 kb on - strandat 2902.687 kb on - strandat 2902.688 kb on + strandat 2902.689 kb on - strandat 2902.689 kb on - strandat 2902.689 kb on - strandat 2902.689 kb on - strandat 2902.689 kb on - strandat 2902.718 kb on + strandat 2902.719 kb on - strandat 2902.739 kb on + strandat 2902.739 kb on + strandat 2902.740 kb on - strandat 2902.784 kb on + strand, within ABIE51_RS13455at 2902.785 kb on - strand, within ABIE51_RS13455at 2902.785 kb on - strand, within ABIE51_RS13455at 2902.785 kb on - strand, within ABIE51_RS13455at 2902.847 kb on + strand, within ABIE51_RS13455at 2902.847 kb on + strand, within ABIE51_RS13455at 2902.847 kb on + strand, within ABIE51_RS13455at 2902.848 kb on - strand, within ABIE51_RS13455

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
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2,902,686 + -0.6
2,902,686 + +1.0
2,902,686 + -1.2
2,902,686 + +1.0
2,902,686 + +0.8
2,902,687 - +1.1
2,902,687 - -0.2
2,902,687 - +0.5
2,902,687 - +0.2
2,902,687 - -0.2
2,902,688 + +0.3
2,902,689 - +0.4
2,902,689 - -0.2
2,902,689 - -0.9
2,902,689 - +0.1
2,902,689 - -0.1
2,902,718 + -0.0
2,902,719 - -0.1
2,902,739 + -0.4
2,902,739 + +0.3
2,902,740 - -0.1
2,902,784 + ABIE51_RS13455 0.14 +0.6
2,902,785 - ABIE51_RS13455 0.15 -0.1
2,902,785 - ABIE51_RS13455 0.15 +0.1
2,902,785 - ABIE51_RS13455 0.15 -0.6
2,902,847 + ABIE51_RS13455 0.40 -0.8
2,902,847 + ABIE51_RS13455 0.40 -0.2
2,902,847 + ABIE51_RS13455 0.40 -0.2
2,902,848 - ABIE51_RS13455 0.40 -2.0

Or see this region's nucleotide sequence