Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04795

Experiment: McCas low carbon steel planktonic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04785 and MMJJ_RS04790 overlap by 20 nucleotidesMMJJ_RS04790 and MMJJ_RS04795 are separated by 12 nucleotidesMMJJ_RS04795 and MMJJ_RS04800 are separated by 46 nucleotidesMMJJ_RS04800 and MMJJ_RS04805 are separated by 23 nucleotides MMJJ_RS04785: MMJJ_RS04785 - OB-fold nucleic acid binding domain-containing protein, at 897,966 to 898,352 _RS04785 MMJJ_RS04790: MMJJ_RS04790 - biotin--[acetyl-CoA-carboxylase] ligase, at 898,333 to 899,058 _RS04790 MMJJ_RS04795: MMJJ_RS04795 - MBL fold metallo-hydrolase, at 899,071 to 899,688 _RS04795 MMJJ_RS04800: MMJJ_RS04800 - 2-phospho-L-lactate guanylyltransferase, at 899,735 to 900,403 _RS04800 MMJJ_RS04805: MMJJ_RS04805 - N-acetyl-gamma-glutamyl-phosphate reductase, at 900,427 to 901,458 _RS04805 Position (kb) 899 900Strain fitness (log2 ratio) -2 -1 0 1 2 3at 898.093 kb on - strand, within MMJJ_RS04785at 898.103 kb on + strand, within MMJJ_RS04785at 898.145 kb on - strand, within MMJJ_RS04785at 898.145 kb on - strand, within MMJJ_RS04785at 898.268 kb on + strand, within MMJJ_RS04785at 898.277 kb on - strand, within MMJJ_RS04785at 898.277 kb on - strand, within MMJJ_RS04785at 898.277 kb on - strand, within MMJJ_RS04785at 898.278 kb on + strand, within MMJJ_RS04785at 898.281 kb on - strand, within MMJJ_RS04785at 898.282 kb on + strand, within MMJJ_RS04785at 898.282 kb on + strand, within MMJJ_RS04785at 898.282 kb on + strand, within MMJJ_RS04785at 898.282 kb on + strand, within MMJJ_RS04785at 898.282 kb on + strand, within MMJJ_RS04785at 898.282 kb on + strand, within MMJJ_RS04785at 898.282 kb on + strand, within MMJJ_RS04785at 898.285 kb on - strand, within MMJJ_RS04785at 898.286 kb on + strand, within MMJJ_RS04785at 898.286 kb on + strand, within MMJJ_RS04785at 898.330 kb on - strandat 898.336 kb on - strandat 898.336 kb on - strandat 898.337 kb on + strandat 898.337 kb on + strandat 898.337 kb on + strandat 898.351 kb on + strandat 898.351 kb on + strandat 898.411 kb on - strand, within MMJJ_RS04790at 898.412 kb on + strand, within MMJJ_RS04790at 898.412 kb on + strand, within MMJJ_RS04790at 898.485 kb on - strand, within MMJJ_RS04790at 898.602 kb on + strand, within MMJJ_RS04790at 898.722 kb on + strandat 898.790 kb on - strand, within MMJJ_RS04790at 898.850 kb on - strand, within MMJJ_RS04790at 898.851 kb on + strand, within MMJJ_RS04790at 898.924 kb on + strandat 898.931 kb on - strand, within MMJJ_RS04790at 899.056 kb on - strandat 899.068 kb on + strandat 899.079 kb on - strandat 899.113 kb on - strandat 899.117 kb on - strandat 899.120 kb on - strandat 899.144 kb on - strand, within MMJJ_RS04795at 899.192 kb on - strand, within MMJJ_RS04795at 899.192 kb on - strand, within MMJJ_RS04795at 899.193 kb on + strand, within MMJJ_RS04795at 899.193 kb on + strand, within MMJJ_RS04795at 899.193 kb on + strand, within MMJJ_RS04795at 899.197 kb on - strand, within MMJJ_RS04795at 899.198 kb on + strand, within MMJJ_RS04795at 899.215 kb on - strand, within MMJJ_RS04795at 899.216 kb on + strand, within MMJJ_RS04795at 899.216 kb on + strand, within MMJJ_RS04795at 899.216 kb on + strand, within MMJJ_RS04795at 899.220 kb on - strand, within MMJJ_RS04795at 899.221 kb on + strand, within MMJJ_RS04795at 899.306 kb on - strand, within MMJJ_RS04795at 899.307 kb on + strand, within MMJJ_RS04795at 899.307 kb on + strand, within MMJJ_RS04795at 899.307 kb on + strand, within MMJJ_RS04795at 899.341 kb on + strand, within MMJJ_RS04795at 899.341 kb on + strand, within MMJJ_RS04795at 899.345 kb on - strand, within MMJJ_RS04795at 899.349 kb on - strand, within MMJJ_RS04795at 899.397 kb on + strand, within MMJJ_RS04795at 899.397 kb on + strand, within MMJJ_RS04795at 899.397 kb on + strand, within MMJJ_RS04795at 899.417 kb on - strand, within MMJJ_RS04795at 899.441 kb on - strand, within MMJJ_RS04795at 899.441 kb on - strand, within MMJJ_RS04795at 899.441 kb on - strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.472 kb on + strand, within MMJJ_RS04795at 899.477 kb on - strand, within MMJJ_RS04795at 899.478 kb on + strand, within MMJJ_RS04795at 899.478 kb on + strand, within MMJJ_RS04795at 899.480 kb on - strand, within MMJJ_RS04795at 899.481 kb on + strand, within MMJJ_RS04795at 899.604 kb on - strand, within MMJJ_RS04795at 899.624 kb on - strand, within MMJJ_RS04795at 899.625 kb on + strand, within MMJJ_RS04795at 899.625 kb on + strand, within MMJJ_RS04795at 899.626 kb on - strand, within MMJJ_RS04795at 899.654 kb on - strandat 899.678 kb on - strandat 899.679 kb on + strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.717 kb on + strandat 899.749 kb on + strandat 899.775 kb on - strandat 899.838 kb on - strand, within MMJJ_RS04800at 899.838 kb on - strand, within MMJJ_RS04800at 899.838 kb on - strand, within MMJJ_RS04800at 899.850 kb on + strand, within MMJJ_RS04800at 899.883 kb on + strand, within MMJJ_RS04800at 899.963 kb on + strand, within MMJJ_RS04800at 900.073 kb on - strand, within MMJJ_RS04800at 900.253 kb on - strand, within MMJJ_RS04800at 900.254 kb on + strand, within MMJJ_RS04800at 900.254 kb on + strand, within MMJJ_RS04800at 900.261 kb on - strand, within MMJJ_RS04800at 900.262 kb on + strand, within MMJJ_RS04800at 900.267 kb on - strand, within MMJJ_RS04800at 900.268 kb on + strand, within MMJJ_RS04800at 900.268 kb on + strand, within MMJJ_RS04800at 900.286 kb on + strandat 900.324 kb on + strand, within MMJJ_RS04800at 900.324 kb on + strand, within MMJJ_RS04800at 900.330 kb on + strand, within MMJJ_RS04800at 900.330 kb on + strandat 900.429 kb on + strandat 900.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas low carbon steel planktonic
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898,093 - MMJJ_RS04785 0.33 +0.1
898,103 + MMJJ_RS04785 0.35 -0.2
898,145 - MMJJ_RS04785 0.46 -1.1
898,145 - MMJJ_RS04785 0.46 -0.1
898,268 + MMJJ_RS04785 0.78 -0.3
898,277 - MMJJ_RS04785 0.80 -0.2
898,277 - MMJJ_RS04785 0.80 +0.0
898,277 - MMJJ_RS04785 0.80 +0.3
898,278 + MMJJ_RS04785 0.81 -0.1
898,281 - MMJJ_RS04785 0.81 +0.1
898,282 + MMJJ_RS04785 0.82 -0.6
898,282 + MMJJ_RS04785 0.82 -2.6
898,282 + MMJJ_RS04785 0.82 +1.0
898,282 + MMJJ_RS04785 0.82 +0.1
898,282 + MMJJ_RS04785 0.82 +0.2
898,282 + MMJJ_RS04785 0.82 -0.1
898,282 + MMJJ_RS04785 0.82 +0.4
898,285 - MMJJ_RS04785 0.82 +0.0
898,286 + MMJJ_RS04785 0.83 +0.2
898,286 + MMJJ_RS04785 0.83 +0.2
898,330 - -0.6
898,336 - +0.6
898,336 - +0.8
898,337 + +0.2
898,337 + -0.4
898,337 + +0.0
898,351 + -0.6
898,351 + +0.4
898,411 - MMJJ_RS04790 0.11 +3.1
898,412 + MMJJ_RS04790 0.11 +0.4
898,412 + MMJJ_RS04790 0.11 +0.9
898,485 - MMJJ_RS04790 0.21 +0.7
898,602 + MMJJ_RS04790 0.37 +1.2
898,722 + -0.1
898,790 - MMJJ_RS04790 0.63 +0.9
898,850 - MMJJ_RS04790 0.71 +0.4
898,851 + MMJJ_RS04790 0.71 +0.3
898,924 + +2.3
898,931 - MMJJ_RS04790 0.82 +0.3
899,056 - -0.4
899,068 + +0.1
899,079 - +0.2
899,113 - +0.2
899,117 - +0.3
899,120 - +0.0
899,144 - MMJJ_RS04795 0.12 -0.6
899,192 - MMJJ_RS04795 0.20 -0.0
899,192 - MMJJ_RS04795 0.20 -0.1
899,193 + MMJJ_RS04795 0.20 -0.0
899,193 + MMJJ_RS04795 0.20 -0.0
899,193 + MMJJ_RS04795 0.20 -0.7
899,197 - MMJJ_RS04795 0.20 -0.3
899,198 + MMJJ_RS04795 0.21 +0.7
899,215 - MMJJ_RS04795 0.23 -0.4
899,216 + MMJJ_RS04795 0.23 +0.1
899,216 + MMJJ_RS04795 0.23 +0.0
899,216 + MMJJ_RS04795 0.23 +0.0
899,220 - MMJJ_RS04795 0.24 -0.6
899,221 + MMJJ_RS04795 0.24 +0.1
899,306 - MMJJ_RS04795 0.38 +0.1
899,307 + MMJJ_RS04795 0.38 -0.4
899,307 + MMJJ_RS04795 0.38 -0.1
899,307 + MMJJ_RS04795 0.38 -0.1
899,341 + MMJJ_RS04795 0.44 +0.0
899,341 + MMJJ_RS04795 0.44 +0.8
899,345 - MMJJ_RS04795 0.44 -0.4
899,349 - MMJJ_RS04795 0.45 -0.1
899,397 + MMJJ_RS04795 0.53 +0.1
899,397 + MMJJ_RS04795 0.53 +0.0
899,397 + MMJJ_RS04795 0.53 -0.4
899,417 - MMJJ_RS04795 0.56 +0.0
899,441 - MMJJ_RS04795 0.60 -0.3
899,441 - MMJJ_RS04795 0.60 +0.5
899,441 - MMJJ_RS04795 0.60 +0.1
899,442 + MMJJ_RS04795 0.60 -0.3
899,442 + MMJJ_RS04795 0.60 -0.6
899,442 + MMJJ_RS04795 0.60 -0.1
899,442 + MMJJ_RS04795 0.60 +0.1
899,442 + MMJJ_RS04795 0.60 -0.0
899,442 + MMJJ_RS04795 0.60 -0.0
899,472 + MMJJ_RS04795 0.65 -0.5
899,477 - MMJJ_RS04795 0.66 +0.1
899,478 + MMJJ_RS04795 0.66 -1.1
899,478 + MMJJ_RS04795 0.66 -0.1
899,480 - MMJJ_RS04795 0.66 -0.0
899,481 + MMJJ_RS04795 0.66 -0.5
899,604 - MMJJ_RS04795 0.86 -0.4
899,624 - MMJJ_RS04795 0.89 +0.3
899,625 + MMJJ_RS04795 0.90 +0.2
899,625 + MMJJ_RS04795 0.90 +0.5
899,626 - MMJJ_RS04795 0.90 -0.0
899,654 - +0.4
899,678 - -0.1
899,679 + +0.6
899,682 - -0.8
899,682 - +1.9
899,682 - -0.5
899,682 - -0.2
899,682 - -0.2
899,682 - +0.1
899,683 + +0.2
899,683 + -0.2
899,717 + +0.1
899,749 + -0.4
899,775 - -1.3
899,838 - MMJJ_RS04800 0.15 -0.7
899,838 - MMJJ_RS04800 0.15 +0.3
899,838 - MMJJ_RS04800 0.15 -0.3
899,850 + MMJJ_RS04800 0.17 +0.3
899,883 + MMJJ_RS04800 0.22 +1.9
899,963 + MMJJ_RS04800 0.34 +0.5
900,073 - MMJJ_RS04800 0.51 +0.5
900,253 - MMJJ_RS04800 0.77 +1.2
900,254 + MMJJ_RS04800 0.78 +0.3
900,254 + MMJJ_RS04800 0.78 +0.9
900,261 - MMJJ_RS04800 0.79 +0.1
900,262 + MMJJ_RS04800 0.79 -1.4
900,267 - MMJJ_RS04800 0.80 +0.6
900,268 + MMJJ_RS04800 0.80 +0.9
900,268 + MMJJ_RS04800 0.80 +1.2
900,286 + +0.1
900,324 + MMJJ_RS04800 0.88 -0.6
900,324 + MMJJ_RS04800 0.88 +0.2
900,330 + MMJJ_RS04800 0.89 -1.3
900,330 + -0.7
900,429 + -0.4
900,483 - +0.4

Or see this region's nucleotide sequence