Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03905

Experiment: McCas low carbon steel planktonic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03895 and MMJJ_RS03900 are separated by 211 nucleotidesMMJJ_RS03900 and MMJJ_RS03905 are separated by 18 nucleotidesMMJJ_RS03905 and MMJJ_RS03910 are separated by 25 nucleotidesMMJJ_RS03910 and MMJJ_RS03915 are separated by 1 nucleotides MMJJ_RS03895: MMJJ_RS03895 - hydrogenase expression/formation protein HypE, at 727,607 to 728,611 _RS03895 MMJJ_RS03900: MMJJ_RS03900 - phosphosulfolactate synthase, at 728,823 to 729,578 _RS03900 MMJJ_RS03905: MMJJ_RS03905 - ATP-binding cassette domain-containing protein, at 729,597 to 730,388 _RS03905 MMJJ_RS03910: MMJJ_RS03910 - hypothetical protein, at 730,414 to 731,112 _RS03910 MMJJ_RS03915: MMJJ_RS03915 - hypothetical protein, at 731,114 to 731,773 _RS03915 Position (kb) 729 730 731Strain fitness (log2 ratio) -1 0 1at 728.629 kb on - strandat 728.640 kb on - strandat 728.640 kb on - strandat 728.640 kb on - strandat 728.644 kb on - strandat 728.644 kb on - strandat 728.661 kb on + strandat 728.681 kb on + strandat 728.691 kb on + strandat 728.691 kb on + strandat 728.703 kb on + strandat 728.732 kb on - strandat 728.732 kb on - strandat 728.732 kb on - strandat 728.735 kb on + strandat 728.736 kb on - strandat 728.743 kb on - strandat 728.750 kb on - strandat 728.750 kb on - strandat 728.750 kb on - strandat 728.750 kb on - strandat 728.750 kb on - strandat 728.751 kb on + strandat 728.751 kb on + strandat 728.752 kb on - strandat 728.753 kb on + strandat 728.755 kb on - strandat 728.756 kb on + strandat 728.756 kb on + strandat 728.760 kb on - strandat 728.795 kb on + strandat 728.868 kb on + strandat 728.875 kb on - strandat 728.876 kb on + strandat 728.918 kb on + strand, within MMJJ_RS03900at 728.923 kb on - strand, within MMJJ_RS03900at 728.935 kb on + strand, within MMJJ_RS03900at 729.061 kb on - strand, within MMJJ_RS03900at 729.061 kb on - strand, within MMJJ_RS03900at 729.061 kb on - strand, within MMJJ_RS03900at 729.061 kb on - strand, within MMJJ_RS03900at 729.062 kb on + strand, within MMJJ_RS03900at 729.062 kb on + strand, within MMJJ_RS03900at 729.090 kb on - strand, within MMJJ_RS03900at 729.091 kb on + strand, within MMJJ_RS03900at 729.095 kb on + strand, within MMJJ_RS03900at 729.095 kb on + strand, within MMJJ_RS03900at 729.095 kb on + strand, within MMJJ_RS03900at 729.104 kb on - strand, within MMJJ_RS03900at 729.104 kb on - strand, within MMJJ_RS03900at 729.104 kb on - strand, within MMJJ_RS03900at 729.105 kb on + strand, within MMJJ_RS03900at 729.113 kb on + strand, within MMJJ_RS03900at 729.275 kb on + strand, within MMJJ_RS03900at 729.397 kb on - strand, within MMJJ_RS03900at 729.412 kb on - strand, within MMJJ_RS03900at 729.427 kb on - strand, within MMJJ_RS03900at 729.468 kb on + strand, within MMJJ_RS03900at 729.468 kb on + strand, within MMJJ_RS03900at 729.469 kb on - strand, within MMJJ_RS03900at 729.472 kb on - strand, within MMJJ_RS03900at 729.473 kb on + strand, within MMJJ_RS03900at 729.503 kb on - strandat 729.504 kb on + strandat 729.504 kb on + strandat 729.580 kb on - strandat 729.620 kb on - strandat 729.667 kb on - strandat 729.667 kb on - strandat 729.667 kb on - strandat 729.668 kb on + strandat 729.668 kb on + strandat 729.668 kb on + strandat 729.668 kb on + strandat 729.673 kb on - strandat 729.864 kb on + strand, within MMJJ_RS03905at 729.882 kb on + strand, within MMJJ_RS03905at 729.965 kb on + strand, within MMJJ_RS03905at 730.009 kb on - strand, within MMJJ_RS03905at 730.016 kb on + strand, within MMJJ_RS03905at 730.016 kb on + strand, within MMJJ_RS03905at 730.087 kb on - strand, within MMJJ_RS03905at 730.169 kb on + strand, within MMJJ_RS03905at 730.172 kb on - strand, within MMJJ_RS03905at 730.173 kb on + strand, within MMJJ_RS03905at 730.173 kb on + strand, within MMJJ_RS03905at 730.360 kb on - strandat 730.360 kb on - strandat 730.386 kb on - strandat 730.387 kb on + strandat 730.472 kb on - strandat 730.484 kb on - strand, within MMJJ_RS03910at 730.484 kb on - strand, within MMJJ_RS03910at 730.512 kb on - strand, within MMJJ_RS03910at 730.527 kb on + strand, within MMJJ_RS03910at 730.528 kb on - strandat 730.529 kb on + strand, within MMJJ_RS03910at 730.529 kb on + strand, within MMJJ_RS03910at 730.529 kb on + strand, within MMJJ_RS03910at 730.530 kb on - strand, within MMJJ_RS03910at 730.530 kb on - strand, within MMJJ_RS03910at 730.583 kb on - strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.593 kb on - strand, within MMJJ_RS03910at 730.594 kb on + strand, within MMJJ_RS03910at 730.594 kb on + strand, within MMJJ_RS03910at 730.594 kb on + strand, within MMJJ_RS03910at 730.618 kb on - strand, within MMJJ_RS03910at 730.621 kb on + strand, within MMJJ_RS03910at 730.670 kb on - strand, within MMJJ_RS03910at 730.671 kb on + strand, within MMJJ_RS03910at 730.671 kb on + strand, within MMJJ_RS03910at 730.671 kb on + strand, within MMJJ_RS03910at 730.764 kb on - strand, within MMJJ_RS03910at 730.815 kb on + strand, within MMJJ_RS03910at 730.818 kb on - strand, within MMJJ_RS03910at 730.818 kb on - strand, within MMJJ_RS03910at 730.818 kb on - strand, within MMJJ_RS03910at 730.819 kb on + strand, within MMJJ_RS03910at 730.827 kb on - strand, within MMJJ_RS03910at 730.827 kb on - strand, within MMJJ_RS03910at 730.827 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.831 kb on + strand, within MMJJ_RS03910at 730.831 kb on + strand, within MMJJ_RS03910at 730.831 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.853 kb on - strand, within MMJJ_RS03910at 730.890 kb on - strand, within MMJJ_RS03910at 730.891 kb on + strand, within MMJJ_RS03910at 730.893 kb on - strand, within MMJJ_RS03910at 730.893 kb on - strand, within MMJJ_RS03910at 730.894 kb on + strand, within MMJJ_RS03910at 730.894 kb on + strand, within MMJJ_RS03910at 730.895 kb on - strand, within MMJJ_RS03910at 730.895 kb on - strand, within MMJJ_RS03910at 730.895 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.898 kb on + strand, within MMJJ_RS03910at 730.898 kb on + strand, within MMJJ_RS03910at 730.905 kb on + strand, within MMJJ_RS03910at 730.949 kb on - strand, within MMJJ_RS03910at 731.099 kb on + strandat 731.135 kb on + strandat 731.153 kb on - strandat 731.242 kb on + strand, within MMJJ_RS03915at 731.267 kb on + strand, within MMJJ_RS03915at 731.355 kb on - strand, within MMJJ_RS03915

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas low carbon steel planktonic
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728,629 - +0.0
728,640 - +0.6
728,640 - -0.0
728,640 - -0.1
728,644 - +0.6
728,644 - +0.6
728,661 + -0.3
728,681 + +0.2
728,691 + +0.1
728,691 + -0.3
728,703 + +0.2
728,732 - -0.1
728,732 - -0.2
728,732 - -0.1
728,735 + -0.0
728,736 - +0.1
728,743 - -0.1
728,750 - +0.1
728,750 - -0.1
728,750 - +0.0
728,750 - -0.1
728,750 - -0.1
728,751 + +0.2
728,751 + +0.8
728,752 - -0.5
728,753 + -0.1
728,755 - +0.0
728,756 + +0.9
728,756 + +0.2
728,760 - -0.2
728,795 + -1.1
728,868 + -0.1
728,875 - -0.5
728,876 + -0.1
728,918 + MMJJ_RS03900 0.13 -0.4
728,923 - MMJJ_RS03900 0.13 +0.1
728,935 + MMJJ_RS03900 0.15 -0.1
729,061 - MMJJ_RS03900 0.31 -0.1
729,061 - MMJJ_RS03900 0.31 +0.2
729,061 - MMJJ_RS03900 0.31 +0.2
729,061 - MMJJ_RS03900 0.31 -0.3
729,062 + MMJJ_RS03900 0.32 +0.1
729,062 + MMJJ_RS03900 0.32 +0.2
729,090 - MMJJ_RS03900 0.35 -0.3
729,091 + MMJJ_RS03900 0.35 +0.3
729,095 + MMJJ_RS03900 0.36 -0.2
729,095 + MMJJ_RS03900 0.36 +0.6
729,095 + MMJJ_RS03900 0.36 -0.5
729,104 - MMJJ_RS03900 0.37 -0.1
729,104 - MMJJ_RS03900 0.37 +0.1
729,104 - MMJJ_RS03900 0.37 -0.1
729,105 + MMJJ_RS03900 0.37 +0.7
729,113 + MMJJ_RS03900 0.38 -0.6
729,275 + MMJJ_RS03900 0.60 +0.4
729,397 - MMJJ_RS03900 0.76 -0.3
729,412 - MMJJ_RS03900 0.78 -0.0
729,427 - MMJJ_RS03900 0.80 +0.3
729,468 + MMJJ_RS03900 0.85 +0.2
729,468 + MMJJ_RS03900 0.85 -0.4
729,469 - MMJJ_RS03900 0.85 -1.6
729,472 - MMJJ_RS03900 0.86 -0.3
729,473 + MMJJ_RS03900 0.86 -0.1
729,503 - -0.0
729,504 + -0.2
729,504 + -0.1
729,580 - +0.2
729,620 - +0.9
729,667 - -0.6
729,667 - +0.1
729,667 - -0.1
729,668 + +0.1
729,668 + +0.2
729,668 + +0.2
729,668 + +0.0
729,673 - +0.1
729,864 + MMJJ_RS03905 0.34 -0.2
729,882 + MMJJ_RS03905 0.36 -0.0
729,965 + MMJJ_RS03905 0.46 -0.3
730,009 - MMJJ_RS03905 0.52 +0.1
730,016 + MMJJ_RS03905 0.53 -0.5
730,016 + MMJJ_RS03905 0.53 -0.2
730,087 - MMJJ_RS03905 0.62 +0.2
730,169 + MMJJ_RS03905 0.72 -0.2
730,172 - MMJJ_RS03905 0.73 -0.8
730,173 + MMJJ_RS03905 0.73 -0.0
730,173 + MMJJ_RS03905 0.73 +0.2
730,360 - +0.3
730,360 - +0.1
730,386 - +0.1
730,387 + +0.0
730,472 - -0.0
730,484 - MMJJ_RS03910 0.10 +0.6
730,484 - MMJJ_RS03910 0.10 +0.5
730,512 - MMJJ_RS03910 0.14 -0.1
730,527 + MMJJ_RS03910 0.16 -0.3
730,528 - -0.7
730,529 + MMJJ_RS03910 0.16 -1.4
730,529 + MMJJ_RS03910 0.16 +0.0
730,529 + MMJJ_RS03910 0.16 -1.7
730,530 - MMJJ_RS03910 0.17 +0.5
730,530 - MMJJ_RS03910 0.17 +0.3
730,583 - MMJJ_RS03910 0.24 -0.2
730,588 + MMJJ_RS03910 0.25 +0.2
730,588 + MMJJ_RS03910 0.25 +0.1
730,588 + MMJJ_RS03910 0.25 -0.1
730,588 + MMJJ_RS03910 0.25 +0.2
730,593 - MMJJ_RS03910 0.26 +0.2
730,594 + MMJJ_RS03910 0.26 -0.1
730,594 + MMJJ_RS03910 0.26 +0.1
730,594 + MMJJ_RS03910 0.26 -0.2
730,618 - MMJJ_RS03910 0.29 -0.4
730,621 + MMJJ_RS03910 0.30 +0.0
730,670 - MMJJ_RS03910 0.37 -0.1
730,671 + MMJJ_RS03910 0.37 -0.1
730,671 + MMJJ_RS03910 0.37 +0.4
730,671 + MMJJ_RS03910 0.37 +0.5
730,764 - MMJJ_RS03910 0.50 +0.1
730,815 + MMJJ_RS03910 0.57 -0.0
730,818 - MMJJ_RS03910 0.58 -0.1
730,818 - MMJJ_RS03910 0.58 +0.1
730,818 - MMJJ_RS03910 0.58 +0.2
730,819 + MMJJ_RS03910 0.58 +0.2
730,827 - MMJJ_RS03910 0.59 -0.1
730,827 - MMJJ_RS03910 0.59 +0.3
730,827 - MMJJ_RS03910 0.59 +0.3
730,830 - MMJJ_RS03910 0.60 -0.6
730,830 - MMJJ_RS03910 0.60 -0.4
730,830 - MMJJ_RS03910 0.60 -0.0
730,830 - MMJJ_RS03910 0.60 -0.5
730,831 + MMJJ_RS03910 0.60 +0.3
730,831 + MMJJ_RS03910 0.60 -0.8
730,831 + MMJJ_RS03910 0.60 +0.7
730,833 + MMJJ_RS03910 0.60 +0.2
730,833 + MMJJ_RS03910 0.60 -0.2
730,833 + MMJJ_RS03910 0.60 +0.5
730,833 + MMJJ_RS03910 0.60 -0.1
730,853 - MMJJ_RS03910 0.63 +0.3
730,890 - MMJJ_RS03910 0.68 -0.1
730,891 + MMJJ_RS03910 0.68 -0.0
730,893 - MMJJ_RS03910 0.69 -0.0
730,893 - MMJJ_RS03910 0.69 -0.1
730,894 + MMJJ_RS03910 0.69 +0.4
730,894 + MMJJ_RS03910 0.69 -0.3
730,895 - MMJJ_RS03910 0.69 -0.8
730,895 - MMJJ_RS03910 0.69 +0.1
730,895 - MMJJ_RS03910 0.69 +0.1
730,897 - MMJJ_RS03910 0.69 +0.5
730,897 - MMJJ_RS03910 0.69 -0.1
730,897 - MMJJ_RS03910 0.69 -0.7
730,897 - MMJJ_RS03910 0.69 +0.1
730,897 - MMJJ_RS03910 0.69 -0.4
730,898 + MMJJ_RS03910 0.69 -0.2
730,898 + MMJJ_RS03910 0.69 +0.3
730,905 + MMJJ_RS03910 0.70 +0.3
730,949 - MMJJ_RS03910 0.77 +0.4
731,099 + +0.0
731,135 + +0.0
731,153 - +0.0
731,242 + MMJJ_RS03915 0.19 -0.1
731,267 + MMJJ_RS03915 0.23 -0.3
731,355 - MMJJ_RS03915 0.37 +0.1

Or see this region's nucleotide sequence