Experiment: McCas low carbon steel planktonic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03330 and MMJJ_RS03335 are separated by 11 nucleotides MMJJ_RS03335 and MMJJ_RS03340 are separated by 73 nucleotides MMJJ_RS03340 and MMJJ_RS03345 are separated by 9 nucleotides MMJJ_RS03345 and MMJJ_RS03350 overlap by 4 nucleotides MMJJ_RS03350 and MMJJ_RS03355 are separated by 195 nucleotides
MMJJ_RS03330: MMJJ_RS03330 - hypothetical protein, at 634,295 to 634,879
_RS03330
MMJJ_RS03335: MMJJ_RS03335 - hypothetical protein, at 634,891 to 635,184
_RS03335
MMJJ_RS03340: MMJJ_RS03340 - hypothetical protein, at 635,258 to 635,644
_RS03340
MMJJ_RS03345: MMJJ_RS03345 - hypothetical protein, at 635,654 to 635,863
_RS03345
MMJJ_RS03350: MMJJ_RS03350 - hypothetical protein, at 635,860 to 636,087
_RS03350
MMJJ_RS03355: MMJJ_RS03355 - hypothetical protein, at 636,283 to 636,924
_RS03355
Position (kb) 635
636 Strain fitness (log2 ratio) -1
0
1 at 634.661 kb on + strand, within MMJJ_RS03330 at 634.661 kb on + strand, within MMJJ_RS03330 at 634.718 kb on - strand, within MMJJ_RS03330 at 634.719 kb on + strand, within MMJJ_RS03330 at 634.719 kb on + strand, within MMJJ_RS03330 at 634.727 kb on + strand, within MMJJ_RS03330 at 634.727 kb on + strand, within MMJJ_RS03330 at 634.769 kb on - strand, within MMJJ_RS03330 at 634.770 kb on + strand, within MMJJ_RS03330 at 634.770 kb on + strand, within MMJJ_RS03330 at 634.779 kb on + strand, within MMJJ_RS03330 at 634.779 kb on + strand, within MMJJ_RS03330 at 634.779 kb on + strand, within MMJJ_RS03330 at 634.811 kb on - strand, within MMJJ_RS03330 at 634.812 kb on + strand, within MMJJ_RS03330 at 634.821 kb on + strand at 634.872 kb on + strand at 634.880 kb on + strand at 634.882 kb on + strand at 634.907 kb on + strand at 634.909 kb on - strand at 634.970 kb on - strand, within MMJJ_RS03335 at 635.057 kb on - strand, within MMJJ_RS03335 at 635.058 kb on + strand, within MMJJ_RS03335 at 635.058 kb on + strand, within MMJJ_RS03335 at 635.104 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.122 kb on + strand, within MMJJ_RS03335 at 635.122 kb on + strand, within MMJJ_RS03335 at 635.122 kb on + strand, within MMJJ_RS03335 at 635.123 kb on - strand, within MMJJ_RS03335 at 635.123 kb on - strand, within MMJJ_RS03335 at 635.124 kb on + strand, within MMJJ_RS03335 at 635.124 kb on + strand, within MMJJ_RS03335 at 635.124 kb on + strand, within MMJJ_RS03335 at 635.153 kb on + strand, within MMJJ_RS03335 at 635.185 kb on + strand at 635.185 kb on + strand at 635.234 kb on + strand at 635.234 kb on + strand at 635.234 kb on + strand at 635.235 kb on - strand at 635.257 kb on + strand at 635.304 kb on - strand, within MMJJ_RS03340 at 635.304 kb on - strand, within MMJJ_RS03340 at 635.305 kb on + strand, within MMJJ_RS03340 at 635.305 kb on + strand, within MMJJ_RS03340 at 635.306 kb on - strand, within MMJJ_RS03340 at 635.307 kb on + strand, within MMJJ_RS03340 at 635.307 kb on + strand, within MMJJ_RS03340 at 635.330 kb on - strand, within MMJJ_RS03340 at 635.372 kb on - strand, within MMJJ_RS03340 at 635.373 kb on + strand, within MMJJ_RS03340 at 635.373 kb on + strand, within MMJJ_RS03340 at 635.396 kb on - strand, within MMJJ_RS03340 at 635.397 kb on + strand, within MMJJ_RS03340 at 635.397 kb on + strand, within MMJJ_RS03340 at 635.408 kb on + strand, within MMJJ_RS03340 at 635.497 kb on + strand, within MMJJ_RS03340 at 635.587 kb on + strand, within MMJJ_RS03340 at 635.595 kb on + strand, within MMJJ_RS03340 at 635.595 kb on + strand, within MMJJ_RS03340 at 635.617 kb on - strand at 635.656 kb on + strand at 635.671 kb on + strand at 635.671 kb on + strand at 635.696 kb on - strand, within MMJJ_RS03345 at 635.722 kb on - strand, within MMJJ_RS03345 at 635.723 kb on + strand, within MMJJ_RS03345 at 635.737 kb on - strand, within MMJJ_RS03345 at 635.738 kb on + strand, within MMJJ_RS03345 at 635.763 kb on - strand, within MMJJ_RS03345 at 635.763 kb on - strand, within MMJJ_RS03345 at 635.763 kb on - strand, within MMJJ_RS03345 at 635.764 kb on + strand, within MMJJ_RS03345 at 635.764 kb on + strand, within MMJJ_RS03345 at 635.771 kb on + strand, within MMJJ_RS03345 at 635.813 kb on - strand, within MMJJ_RS03345 at 635.857 kb on - strand at 635.954 kb on - strand, within MMJJ_RS03350 at 635.992 kb on - strand, within MMJJ_RS03350 at 636.000 kb on - strand, within MMJJ_RS03350 at 636.169 kb on - strand at 636.169 kb on - strand at 636.173 kb on + strand at 636.178 kb on + strand at 636.284 kb on - strand at 636.284 kb on - strand at 636.294 kb on - strand at 636.294 kb on - strand at 636.301 kb on - strand at 636.306 kb on - strand at 636.325 kb on - strand at 636.325 kb on - strand at 636.326 kb on + strand at 636.328 kb on + strand at 636.328 kb on + strand at 636.366 kb on - strand, within MMJJ_RS03355 at 636.367 kb on + strand, within MMJJ_RS03355 at 636.375 kb on - strand, within MMJJ_RS03355 at 636.433 kb on + strand, within MMJJ_RS03355 at 636.474 kb on - strand at 636.499 kb on - strand, within MMJJ_RS03355 at 636.500 kb on + strand, within MMJJ_RS03355 at 636.522 kb on - strand, within MMJJ_RS03355 at 636.549 kb on - strand, within MMJJ_RS03355 at 636.549 kb on - strand, within MMJJ_RS03355 at 636.550 kb on + strand, within MMJJ_RS03355 at 636.633 kb on - strand, within MMJJ_RS03355 at 636.633 kb on - strand, within MMJJ_RS03355 at 636.637 kb on - strand, within MMJJ_RS03355 at 636.637 kb on - strand, within MMJJ_RS03355 at 636.654 kb on - strand, within MMJJ_RS03355 at 636.655 kb on + strand, within MMJJ_RS03355 at 636.676 kb on - strand, within MMJJ_RS03355 at 636.677 kb on + strand, within MMJJ_RS03355 at 636.679 kb on - strand, within MMJJ_RS03355 at 636.684 kb on - strand, within MMJJ_RS03355 at 636.684 kb on - strand, within MMJJ_RS03355 at 636.685 kb on + strand, within MMJJ_RS03355 at 636.690 kb on + strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.712 kb on + strand, within MMJJ_RS03355 at 636.715 kb on - strand, within MMJJ_RS03355 at 636.715 kb on - strand, within MMJJ_RS03355 at 636.724 kb on + strand, within MMJJ_RS03355 at 636.774 kb on - strand, within MMJJ_RS03355 at 636.784 kb on - strand, within MMJJ_RS03355 at 636.792 kb on - strand, within MMJJ_RS03355 at 636.831 kb on - strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.849 kb on - strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction McCas low carbon steel planktonic remove 634,661 + MMJJ_RS03330 0.63 -0.2 634,661 + MMJJ_RS03330 0.63 +0.4 634,718 - MMJJ_RS03330 0.72 -0.4 634,719 + MMJJ_RS03330 0.72 +0.3 634,719 + MMJJ_RS03330 0.72 +1.0 634,727 + MMJJ_RS03330 0.74 +0.0 634,727 + MMJJ_RS03330 0.74 -0.1 634,769 - MMJJ_RS03330 0.81 -0.2 634,770 + MMJJ_RS03330 0.81 -0.7 634,770 + MMJJ_RS03330 0.81 -0.2 634,779 + MMJJ_RS03330 0.83 -0.0 634,779 + MMJJ_RS03330 0.83 +0.6 634,779 + MMJJ_RS03330 0.83 +0.2 634,811 - MMJJ_RS03330 0.88 +0.2 634,812 + MMJJ_RS03330 0.88 -0.0 634,821 + +0.1 634,872 + -0.4 634,880 + -0.1 634,882 + +0.2 634,907 + -0.2 634,909 - +0.5 634,970 - MMJJ_RS03335 0.27 -0.5 635,057 - MMJJ_RS03335 0.56 +0.1 635,058 + MMJJ_RS03335 0.57 -0.2 635,058 + MMJJ_RS03335 0.57 -0.4 635,104 - MMJJ_RS03335 0.72 -0.5 635,121 - MMJJ_RS03335 0.78 -0.5 635,121 - MMJJ_RS03335 0.78 +0.1 635,121 - MMJJ_RS03335 0.78 +0.4 635,121 - MMJJ_RS03335 0.78 +0.1 635,121 - MMJJ_RS03335 0.78 +0.2 635,122 + MMJJ_RS03335 0.79 -0.1 635,122 + MMJJ_RS03335 0.79 -0.0 635,122 + MMJJ_RS03335 0.79 -0.3 635,123 - MMJJ_RS03335 0.79 -1.0 635,123 - MMJJ_RS03335 0.79 -0.1 635,124 + MMJJ_RS03335 0.79 -0.4 635,124 + MMJJ_RS03335 0.79 +0.4 635,124 + MMJJ_RS03335 0.79 +0.3 635,153 + MMJJ_RS03335 0.89 +0.1 635,185 + +0.2 635,185 + +0.2 635,234 + +0.2 635,234 + +0.5 635,234 + +0.6 635,235 - -0.6 635,257 + +0.3 635,304 - MMJJ_RS03340 0.12 -0.4 635,304 - MMJJ_RS03340 0.12 -0.3 635,305 + MMJJ_RS03340 0.12 +0.1 635,305 + MMJJ_RS03340 0.12 +0.1 635,306 - MMJJ_RS03340 0.12 +0.0 635,307 + MMJJ_RS03340 0.13 -0.1 635,307 + MMJJ_RS03340 0.13 -1.3 635,330 - MMJJ_RS03340 0.19 -0.3 635,372 - MMJJ_RS03340 0.29 -0.0 635,373 + MMJJ_RS03340 0.30 -0.1 635,373 + MMJJ_RS03340 0.30 +0.9 635,396 - MMJJ_RS03340 0.36 +0.7 635,397 + MMJJ_RS03340 0.36 +0.2 635,397 + MMJJ_RS03340 0.36 +0.0 635,408 + MMJJ_RS03340 0.39 -0.2 635,497 + MMJJ_RS03340 0.62 +0.1 635,587 + MMJJ_RS03340 0.85 -0.3 635,595 + MMJJ_RS03340 0.87 +0.3 635,595 + MMJJ_RS03340 0.87 +0.3 635,617 - -0.1 635,656 + -0.5 635,671 + -0.3 635,671 + -0.5 635,696 - MMJJ_RS03345 0.20 -1.2 635,722 - MMJJ_RS03345 0.32 -0.1 635,723 + MMJJ_RS03345 0.33 -0.3 635,737 - MMJJ_RS03345 0.40 +0.3 635,738 + MMJJ_RS03345 0.40 -0.3 635,763 - MMJJ_RS03345 0.52 -0.2 635,763 - MMJJ_RS03345 0.52 +0.0 635,763 - MMJJ_RS03345 0.52 -0.0 635,764 + MMJJ_RS03345 0.52 -0.1 635,764 + MMJJ_RS03345 0.52 +0.1 635,771 + MMJJ_RS03345 0.56 +0.1 635,813 - MMJJ_RS03345 0.76 -0.3 635,857 - -0.1 635,954 - MMJJ_RS03350 0.41 +0.1 635,992 - MMJJ_RS03350 0.58 +1.3 636,000 - MMJJ_RS03350 0.61 +0.2 636,169 - +0.2 636,169 - +0.3 636,173 + -0.0 636,178 + -1.5 636,284 - -0.1 636,284 - +0.0 636,294 - +0.4 636,294 - -0.1 636,301 - -0.1 636,306 - +0.9 636,325 - -0.4 636,325 - +0.2 636,326 + +0.7 636,328 + +0.2 636,328 + -0.1 636,366 - MMJJ_RS03355 0.13 -0.1 636,367 + MMJJ_RS03355 0.13 +0.2 636,375 - MMJJ_RS03355 0.14 +0.3 636,433 + MMJJ_RS03355 0.23 -0.0 636,474 - +1.2 636,499 - MMJJ_RS03355 0.34 -0.5 636,500 + MMJJ_RS03355 0.34 -0.1 636,522 - MMJJ_RS03355 0.37 -0.0 636,549 - MMJJ_RS03355 0.41 -0.3 636,549 - MMJJ_RS03355 0.41 -0.7 636,550 + MMJJ_RS03355 0.42 -0.2 636,633 - MMJJ_RS03355 0.55 +0.3 636,633 - MMJJ_RS03355 0.55 -0.7 636,637 - MMJJ_RS03355 0.55 +0.1 636,637 - MMJJ_RS03355 0.55 -0.6 636,654 - MMJJ_RS03355 0.58 -0.3 636,655 + MMJJ_RS03355 0.58 -0.4 636,676 - MMJJ_RS03355 0.61 -0.4 636,677 + MMJJ_RS03355 0.61 +0.2 636,679 - MMJJ_RS03355 0.62 -0.1 636,684 - MMJJ_RS03355 0.62 -0.1 636,684 - MMJJ_RS03355 0.62 +0.0 636,685 + MMJJ_RS03355 0.63 -0.1 636,690 + MMJJ_RS03355 0.63 +0.2 636,694 - MMJJ_RS03355 0.64 +0.2 636,694 - MMJJ_RS03355 0.64 -0.5 636,694 - MMJJ_RS03355 0.64 -0.5 636,712 + MMJJ_RS03355 0.67 -0.3 636,715 - MMJJ_RS03355 0.67 -0.1 636,715 - MMJJ_RS03355 0.67 -0.1 636,724 + MMJJ_RS03355 0.69 +0.1 636,774 - MMJJ_RS03355 0.76 -0.1 636,784 - MMJJ_RS03355 0.78 -0.0 636,792 - MMJJ_RS03355 0.79 +0.3 636,831 - MMJJ_RS03355 0.85 -0.1 636,832 + MMJJ_RS03355 0.86 +1.2 636,832 + MMJJ_RS03355 0.86 +0.4 636,832 + MMJJ_RS03355 0.86 +0.2 636,849 - MMJJ_RS03355 0.88 -0.3 636,850 + MMJJ_RS03355 0.88 +0.0 636,850 + MMJJ_RS03355 0.88 +0.2 636,850 + MMJJ_RS03355 0.88 +0.2
Or see this region's nucleotide sequence