Experiment: McCas low carbon steel planktonic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00825 and MMJJ_RS00830 are separated by 24 nucleotides MMJJ_RS00830 and MMJJ_RS00835 are separated by 267 nucleotides MMJJ_RS00835 and MMJJ_RS00840 are separated by 14 nucleotides
MMJJ_RS00825: MMJJ_RS00825 - uroporphyrinogen decarboxylase family protein, at 157,554 to 158,645
_RS00825
MMJJ_RS00830: MMJJ_RS00830 - corrinoid protein, at 158,670 to 159,329
_RS00830
MMJJ_RS00835: MMJJ_RS00835 - hypothetical protein, at 159,597 to 159,941
_RS00835
MMJJ_RS00840: MMJJ_RS00840 - hypothetical protein, at 159,956 to 160,249
_RS00840
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 157.737 kb on + strand, within MMJJ_RS00825 at 157.779 kb on + strand, within MMJJ_RS00825 at 157.808 kb on - strand, within MMJJ_RS00825 at 157.879 kb on + strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.934 kb on - strand, within MMJJ_RS00825 at 157.959 kb on - strand, within MMJJ_RS00825 at 157.980 kb on - strand, within MMJJ_RS00825 at 157.981 kb on + strand, within MMJJ_RS00825 at 157.981 kb on + strand, within MMJJ_RS00825 at 158.019 kb on - strand, within MMJJ_RS00825 at 158.019 kb on - strand, within MMJJ_RS00825 at 158.020 kb on + strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.051 kb on - strand, within MMJJ_RS00825 at 158.051 kb on - strand, within MMJJ_RS00825 at 158.052 kb on + strand, within MMJJ_RS00825 at 158.054 kb on - strand, within MMJJ_RS00825 at 158.106 kb on - strand, within MMJJ_RS00825 at 158.126 kb on - strand, within MMJJ_RS00825 at 158.223 kb on + strand, within MMJJ_RS00825 at 158.289 kb on + strand, within MMJJ_RS00825 at 158.316 kb on - strand, within MMJJ_RS00825 at 158.322 kb on + strand, within MMJJ_RS00825 at 158.344 kb on + strand, within MMJJ_RS00825 at 158.372 kb on - strand, within MMJJ_RS00825 at 158.465 kb on + strand, within MMJJ_RS00825 at 158.646 kb on + strand at 158.680 kb on + strand at 158.732 kb on - strand at 158.735 kb on + strand at 158.735 kb on + strand at 158.827 kb on + strand, within MMJJ_RS00830 at 158.945 kb on - strand, within MMJJ_RS00830 at 158.956 kb on - strand, within MMJJ_RS00830 at 158.995 kb on + strand, within MMJJ_RS00830 at 159.048 kb on + strand, within MMJJ_RS00830 at 159.076 kb on + strand, within MMJJ_RS00830 at 159.076 kb on + strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.107 kb on + strand, within MMJJ_RS00830 at 159.107 kb on + strand, within MMJJ_RS00830 at 159.107 kb on + strand, within MMJJ_RS00830 at 159.127 kb on + strand, within MMJJ_RS00830 at 159.130 kb on + strand, within MMJJ_RS00830 at 159.130 kb on + strand, within MMJJ_RS00830 at 159.238 kb on - strand, within MMJJ_RS00830 at 159.250 kb on + strand, within MMJJ_RS00830 at 159.276 kb on + strand at 159.303 kb on - strand at 159.304 kb on + strand at 159.304 kb on + strand at 159.304 kb on + strand at 159.354 kb on + strand at 159.475 kb on - strand at 159.490 kb on - strand at 159.538 kb on - strand at 159.538 kb on - strand at 159.538 kb on - strand at 159.539 kb on + strand at 159.539 kb on + strand at 159.539 kb on + strand at 159.541 kb on - strand at 159.541 kb on - strand at 159.542 kb on + strand at 159.542 kb on + strand at 159.542 kb on + strand at 159.544 kb on - strand at 159.544 kb on - strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.546 kb on - strand at 159.547 kb on + strand at 159.547 kb on + strand at 159.547 kb on + strand at 159.547 kb on + strand at 159.549 kb on - strand at 159.549 kb on - strand at 159.550 kb on + strand at 159.550 kb on + strand at 159.550 kb on + strand at 159.551 kb on - strand at 159.551 kb on - strand at 159.551 kb on - strand at 159.559 kb on - strand at 159.559 kb on - strand at 159.560 kb on + strand at 159.560 kb on + strand at 159.560 kb on + strand at 159.561 kb on - strand at 159.576 kb on - strand at 159.581 kb on - strand at 159.581 kb on - strand at 159.581 kb on - strand at 159.581 kb on - strand at 159.582 kb on + strand at 159.586 kb on + strand at 159.646 kb on + strand, within MMJJ_RS00835 at 159.647 kb on - strand, within MMJJ_RS00835 at 159.647 kb on - strand, within MMJJ_RS00835 at 159.647 kb on - strand, within MMJJ_RS00835 at 159.648 kb on + strand, within MMJJ_RS00835 at 159.648 kb on + strand, within MMJJ_RS00835 at 159.648 kb on + strand, within MMJJ_RS00835 at 159.705 kb on + strand, within MMJJ_RS00835 at 159.728 kb on - strand, within MMJJ_RS00835 at 159.730 kb on - strand, within MMJJ_RS00835 at 159.731 kb on + strand, within MMJJ_RS00835 at 159.731 kb on + strand, within MMJJ_RS00835 at 159.733 kb on - strand, within MMJJ_RS00835 at 159.734 kb on + strand, within MMJJ_RS00835 at 159.734 kb on + strand, within MMJJ_RS00835 at 159.734 kb on + strand, within MMJJ_RS00835 at 159.741 kb on - strand, within MMJJ_RS00835 at 159.742 kb on + strand, within MMJJ_RS00835 at 159.742 kb on + strand, within MMJJ_RS00835 at 159.764 kb on + strand, within MMJJ_RS00835 at 159.764 kb on + strand, within MMJJ_RS00835 at 159.822 kb on - strand, within MMJJ_RS00835 at 159.887 kb on + strand, within MMJJ_RS00835 at 159.923 kb on - strand at 159.940 kb on + strand at 159.944 kb on - strand at 159.945 kb on + strand at 159.958 kb on + strand at 159.989 kb on + strand, within MMJJ_RS00840 at 160.049 kb on + strand, within MMJJ_RS00840 at 160.062 kb on + strand, within MMJJ_RS00840 at 160.109 kb on + strand, within MMJJ_RS00840 at 160.113 kb on - strand, within MMJJ_RS00840 at 160.128 kb on + strand, within MMJJ_RS00840 at 160.158 kb on + strand, within MMJJ_RS00840 at 160.288 kb on - strand at 160.288 kb on - strand at 160.288 kb on - strand at 160.289 kb on + strand at 160.290 kb on - strand at 160.290 kb on - strand at 160.290 kb on - strand at 160.291 kb on + strand at 160.291 kb on + strand at 160.300 kb on + strand at 160.320 kb on - strand at 160.321 kb on + strand at 160.321 kb on + strand at 160.321 kb on + strand at 160.322 kb on - strand at 160.322 kb on - strand at 160.322 kb on - strand at 160.322 kb on - strand at 160.322 kb on - strand at 160.323 kb on + strand at 160.323 kb on + strand at 160.323 kb on + strand at 160.323 kb on + strand at 160.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas low carbon steel planktonic remove 157,737 + MMJJ_RS00825 0.17 -0.0 157,779 + MMJJ_RS00825 0.21 -0.1 157,808 - MMJJ_RS00825 0.23 -0.1 157,879 + MMJJ_RS00825 0.30 +0.2 157,932 - MMJJ_RS00825 0.35 +0.9 157,932 - MMJJ_RS00825 0.35 -0.0 157,932 - MMJJ_RS00825 0.35 +0.0 157,934 - MMJJ_RS00825 0.35 +0.0 157,959 - MMJJ_RS00825 0.37 +0.1 157,980 - MMJJ_RS00825 0.39 +0.2 157,981 + MMJJ_RS00825 0.39 -0.4 157,981 + MMJJ_RS00825 0.39 +0.1 158,019 - MMJJ_RS00825 0.43 -0.6 158,019 - MMJJ_RS00825 0.43 -0.6 158,020 + MMJJ_RS00825 0.43 -0.0 158,027 - MMJJ_RS00825 0.43 -0.5 158,027 - MMJJ_RS00825 0.43 -0.2 158,027 - MMJJ_RS00825 0.43 +0.0 158,027 - MMJJ_RS00825 0.43 +0.3 158,027 - MMJJ_RS00825 0.43 -0.4 158,028 + MMJJ_RS00825 0.43 +0.1 158,028 + MMJJ_RS00825 0.43 -0.0 158,028 + MMJJ_RS00825 0.43 -0.2 158,051 - MMJJ_RS00825 0.46 +0.2 158,051 - MMJJ_RS00825 0.46 -0.2 158,052 + MMJJ_RS00825 0.46 -0.1 158,054 - MMJJ_RS00825 0.46 +0.3 158,106 - MMJJ_RS00825 0.51 -0.6 158,126 - MMJJ_RS00825 0.52 +0.0 158,223 + MMJJ_RS00825 0.61 -0.7 158,289 + MMJJ_RS00825 0.67 -0.5 158,316 - MMJJ_RS00825 0.70 -0.3 158,322 + MMJJ_RS00825 0.70 -0.1 158,344 + MMJJ_RS00825 0.72 -0.2 158,372 - MMJJ_RS00825 0.75 -0.2 158,465 + MMJJ_RS00825 0.83 +0.0 158,646 + +0.2 158,680 + +0.4 158,732 - +0.4 158,735 + +0.3 158,735 + -0.8 158,827 + MMJJ_RS00830 0.24 -0.8 158,945 - MMJJ_RS00830 0.42 -0.1 158,956 - MMJJ_RS00830 0.43 -0.3 158,995 + MMJJ_RS00830 0.49 -0.8 159,048 + MMJJ_RS00830 0.57 +0.0 159,076 + MMJJ_RS00830 0.62 -0.2 159,076 + MMJJ_RS00830 0.62 +0.3 159,106 - MMJJ_RS00830 0.66 +0.0 159,106 - MMJJ_RS00830 0.66 -0.1 159,106 - MMJJ_RS00830 0.66 +0.2 159,106 - MMJJ_RS00830 0.66 -0.2 159,107 + MMJJ_RS00830 0.66 -0.6 159,107 + MMJJ_RS00830 0.66 -0.2 159,107 + MMJJ_RS00830 0.66 -0.0 159,127 + MMJJ_RS00830 0.69 +0.1 159,130 + MMJJ_RS00830 0.70 +0.1 159,130 + MMJJ_RS00830 0.70 +0.1 159,238 - MMJJ_RS00830 0.86 +0.0 159,250 + MMJJ_RS00830 0.88 -0.3 159,276 + +0.0 159,303 - +0.0 159,304 + +0.2 159,304 + +0.3 159,304 + +0.0 159,354 + -0.0 159,475 - +0.1 159,490 - -2.5 159,538 - -0.2 159,538 - -0.2 159,538 - -0.1 159,539 + -0.1 159,539 + -0.4 159,539 + -0.1 159,541 - +0.1 159,541 - +0.0 159,542 + -0.2 159,542 + -0.3 159,542 + -0.3 159,544 - +0.1 159,544 - +1.2 159,545 + +0.4 159,545 + -0.1 159,545 + -0.3 159,545 + +0.5 159,545 + +0.1 159,545 + -0.0 159,546 - -0.1 159,547 + +0.3 159,547 + -0.2 159,547 + +0.4 159,547 + -0.2 159,549 - +0.0 159,549 - +0.3 159,550 + -0.0 159,550 + -0.1 159,550 + +0.2 159,551 - -0.4 159,551 - +0.1 159,551 - +0.2 159,559 - +0.3 159,559 - +0.1 159,560 + +0.2 159,560 + +0.1 159,560 + +0.1 159,561 - +0.8 159,576 - -0.1 159,581 - -0.1 159,581 - -0.2 159,581 - -0.7 159,581 - -0.1 159,582 + -0.8 159,586 + +0.5 159,646 + MMJJ_RS00835 0.14 -0.1 159,647 - MMJJ_RS00835 0.14 -0.2 159,647 - MMJJ_RS00835 0.14 +0.3 159,647 - MMJJ_RS00835 0.14 -0.2 159,648 + MMJJ_RS00835 0.15 -0.2 159,648 + MMJJ_RS00835 0.15 -0.3 159,648 + MMJJ_RS00835 0.15 -0.1 159,705 + MMJJ_RS00835 0.31 +0.0 159,728 - MMJJ_RS00835 0.38 -0.3 159,730 - MMJJ_RS00835 0.39 +0.1 159,731 + MMJJ_RS00835 0.39 -0.2 159,731 + MMJJ_RS00835 0.39 +0.2 159,733 - MMJJ_RS00835 0.39 -0.1 159,734 + MMJJ_RS00835 0.40 -0.2 159,734 + MMJJ_RS00835 0.40 +0.1 159,734 + MMJJ_RS00835 0.40 +0.2 159,741 - MMJJ_RS00835 0.42 -0.1 159,742 + MMJJ_RS00835 0.42 +0.1 159,742 + MMJJ_RS00835 0.42 +0.1 159,764 + MMJJ_RS00835 0.48 +0.3 159,764 + MMJJ_RS00835 0.48 +0.9 159,822 - MMJJ_RS00835 0.65 -0.2 159,887 + MMJJ_RS00835 0.84 +0.1 159,923 - +0.1 159,940 + +0.1 159,944 - -0.3 159,945 + -0.1 159,958 + -0.0 159,989 + MMJJ_RS00840 0.11 +0.3 160,049 + MMJJ_RS00840 0.32 -0.2 160,062 + MMJJ_RS00840 0.36 -0.5 160,109 + MMJJ_RS00840 0.52 +0.2 160,113 - MMJJ_RS00840 0.53 -0.1 160,128 + MMJJ_RS00840 0.59 +0.4 160,158 + MMJJ_RS00840 0.69 +0.3 160,288 - -0.0 160,288 - +0.3 160,288 - +0.0 160,289 + -0.0 160,290 - -0.0 160,290 - +0.1 160,290 - -0.2 160,291 + -0.4 160,291 + -0.5 160,300 + -0.1 160,320 - +0.0 160,321 + +0.1 160,321 + +0.5 160,321 + -0.2 160,322 - +0.0 160,322 - -0.2 160,322 - -0.3 160,322 - -0.7 160,322 - -0.3 160,323 + -0.1 160,323 + -0.5 160,323 + +0.0 160,323 + -0.3 160,328 + -0.1
Or see this region's nucleotide sequence