Experiment: 7H9 with Irgasan 0.065 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0597c and Rv0598c are separated by 250 nucleotides Rv0598c and Rv0599c overlap by 4 nucleotides Rv0599c and Rv0600c are separated by 103 nucleotides Rv0600c and Rv0601c are separated by 113 nucleotides
Rv0597c: Rv0597c - Conserved hypothetical protein, at 695,668 to 696,903
Rv0597c
Rv0598c: Rv0598c - Possible toxin VapC27. Contains PIN domain., at 697,154 to 697,567
Rv0598c
Rv0599c: Rv0599c - Possible antitoxin VapB27, at 697,564 to 697,800
Rv0599c
Rv0600c: Rv0600c - Two component sensor kinase [second part], at 697,904 to 698,410
Rv0600c
Rv0601c: Rv0601c - Two component sensor kinase [first part], at 698,524 to 698,994
Rv0601c
Position (kb) 697
698 Strain fitness (log2 ratio) -2
-1
0
1 at 696.326 kb on + strand, within Rv0597c at 696.327 kb on - strand, within Rv0597c at 696.327 kb on - strand, within Rv0597c at 696.327 kb on - strand, within Rv0597c at 696.327 kb on - strand, within Rv0597c at 696.703 kb on + strand, within Rv0597c at 696.914 kb on + strand at 697.270 kb on - strand, within Rv0598c at 697.366 kb on + strand, within Rv0598c at 697.432 kb on - strand, within Rv0598c at 697.708 kb on + strand, within Rv0599c at 697.806 kb on + strand at 697.905 kb on + strand at 697.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Irgasan 0.065 mM remove 696,326 + Rv0597c 0.53 -1.2 696,327 - Rv0597c 0.53 -0.3 696,327 - Rv0597c 0.53 -0.3 696,327 - Rv0597c 0.53 +0.0 696,327 - Rv0597c 0.53 -0.3 696,703 + Rv0597c 0.84 -0.3 696,914 + -2.7 697,270 - Rv0598c 0.28 +0.1 697,366 + Rv0598c 0.51 -0.9 697,432 - Rv0598c 0.67 -2.0 697,708 + Rv0599c 0.61 -1.5 697,806 + -0.8 697,905 + -0.4 697,916 - -0.2
Or see this region's nucleotide sequence