Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0475 and Rv0476 are separated by 111 nucleotides Rv0476 and Rv0477 are separated by 4 nucleotides Rv0477 and Rv0478 overlap by 1 nucleotides Rv0478 and Rv0479c are separated by 24 nucleotides
Rv0475: Rv0475 - Iron-regulated heparin binding hemagglutinin HbhA (adhesin), at 565,797 to 566,396
Rv0475
Rv0476: Rv0476 - Possible conserved transmembrane protein, at 566,508 to 566,771
Rv0476
Rv0477: Rv0477 - Possible conserved secreted protein, at 566,776 to 567,222
Rv0477
Rv0478: Rv0478 - Probable deoxyribose-phosphate aldolase DeoC (phosphodeoxyriboaldolase) (deoxyriboaldolase), at 567,222 to 567,896
Rv0478
Rv0479c: Rv0479c - Probable conserved membrane protein, at 567,921 to 568,967
Rv0479c
Position (kb) 566
567
568 Strain fitness (log2 ratio) -2
-1
0
1 at 565.776 kb on + strand at 565.780 kb on + strand at 565.780 kb on + strand at 565.780 kb on + strand at 565.781 kb on - strand at 565.781 kb on - strand at 566.039 kb on + strand, within Rv0475 at 566.080 kb on - strand, within Rv0475 at 566.114 kb on - strand, within Rv0475 at 566.169 kb on + strand, within Rv0475 at 566.170 kb on - strand, within Rv0475 at 566.276 kb on + strand, within Rv0475 at 566.276 kb on + strand, within Rv0475 at 566.277 kb on - strand, within Rv0475 at 566.394 kb on + strand at 566.394 kb on + strand at 566.395 kb on - strand at 566.395 kb on - strand at 566.516 kb on - strand at 566.516 kb on - strand at 566.547 kb on + strand, within Rv0476 at 566.547 kb on + strand, within Rv0476 at 566.586 kb on + strand, within Rv0476 at 566.586 kb on + strand, within Rv0476 at 566.586 kb on + strand, within Rv0476 at 566.587 kb on - strand, within Rv0476 at 566.589 kb on - strand, within Rv0476 at 566.719 kb on - strand, within Rv0476 at 566.828 kb on + strand, within Rv0477 at 566.828 kb on + strand, within Rv0477 at 566.829 kb on - strand, within Rv0477 at 566.829 kb on - strand, within Rv0477 at 566.881 kb on + strand, within Rv0477 at 566.881 kb on + strand, within Rv0477 at 566.881 kb on + strand, within Rv0477 at 566.881 kb on + strand, within Rv0477 at 566.881 kb on + strand, within Rv0477 at 566.882 kb on - strand, within Rv0477 at 566.882 kb on - strand, within Rv0477 at 566.882 kb on - strand, within Rv0477 at 566.882 kb on - strand, within Rv0477 at 566.882 kb on - strand, within Rv0477 at 566.982 kb on + strand, within Rv0477 at 566.983 kb on - strand, within Rv0477 at 567.101 kb on - strand, within Rv0477 at 567.101 kb on - strand, within Rv0477 at 567.262 kb on + strand at 567.342 kb on + strand, within Rv0478
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 565,776 + -0.3 565,780 + -0.4 565,780 + +0.4 565,780 + -0.8 565,781 - +0.2 565,781 - -0.1 566,039 + Rv0475 0.40 +1.1 566,080 - Rv0475 0.47 -0.2 566,114 - Rv0475 0.53 -1.1 566,169 + Rv0475 0.62 +0.5 566,170 - Rv0475 0.62 +0.4 566,276 + Rv0475 0.80 -0.1 566,276 + Rv0475 0.80 -0.3 566,277 - Rv0475 0.80 +0.6 566,394 + +1.1 566,394 + +0.8 566,395 - -0.5 566,395 - +0.0 566,516 - -0.6 566,516 - -1.7 566,547 + Rv0476 0.15 -0.5 566,547 + Rv0476 0.15 +0.2 566,586 + Rv0476 0.30 -0.6 566,586 + Rv0476 0.30 -1.2 566,586 + Rv0476 0.30 +1.6 566,587 - Rv0476 0.30 -2.5 566,589 - Rv0476 0.31 -1.5 566,719 - Rv0476 0.80 +1.5 566,828 + Rv0477 0.12 +0.8 566,828 + Rv0477 0.12 -0.1 566,829 - Rv0477 0.12 -0.8 566,829 - Rv0477 0.12 -1.3 566,881 + Rv0477 0.23 -0.2 566,881 + Rv0477 0.23 -1.3 566,881 + Rv0477 0.23 -1.2 566,881 + Rv0477 0.23 -0.9 566,881 + Rv0477 0.23 -0.2 566,882 - Rv0477 0.24 -0.5 566,882 - Rv0477 0.24 -0.8 566,882 - Rv0477 0.24 -0.1 566,882 - Rv0477 0.24 +0.6 566,882 - Rv0477 0.24 -2.0 566,982 + Rv0477 0.46 -0.6 566,983 - Rv0477 0.46 -0.6 567,101 - Rv0477 0.73 -1.8 567,101 - Rv0477 0.73 -0.4 567,262 + -1.2 567,342 + Rv0478 0.18 -0.5
Or see this region's nucleotide sequence