Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2117

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
2,376,330	-				-0.3
2,376,388	-				+0.2
2,376,398	-				-2.9
2,376,398	-				-0.3
2,376,485	-				-1.1
2,376,591	-				+2.2
2,376,591	-				+0.7
2,376,881	-		Rv2116	0.54	-0.7
2,376,881	-		Rv2116	0.54	-1.4
2,377,039	-		Rv2116	0.82	+0.5
2,377,072	-		Rv2116	0.88	-0.4
2,377,439	+				-0.7
2,377,440	-				-0.3
2,377,440	-				-0.2
2,377,494	-				+0.7
2,377,494	-				+0.9
2,377,559	+		Rv2118c	0.11	-0.4
2,377,600	-		Rv2118c	0.15	-0.1
2,377,708	+		Rv2118c	0.28	-0.7
2,377,709	-		Rv2118c	0.28	-0.2
2,377,924	+		Rv2118c	0.54	+0.2
2,378,022	+		Rv2118c	0.65	+0.3
2,378,022	+		Rv2118c	0.65	-1.3
2,378,023	-		Rv2118c	0.66	-0.8
2,378,062	+		Rv2118c	0.70	-0.4
2,378,062	+		Rv2118c	0.70	-1.4
2,378,099	-		Rv2118c	0.75	-0.4
2,378,375	-				-0.7