Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1279

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
1,429,206	+		Rv1278	0.68	-1.7
1,429,778	+		Rv1278	0.90	-1.0
1,430,034	+				-0.1
1,430,034	+				-1.2
1,430,035	-				-2.1
1,430,081	-				-1.0
1,430,081	-				-1.8
1,430,081	-				+0.4
1,430,081	-				+0.5
1,430,248	+		Rv1279	0.12	-0.1
1,430,407	+		Rv1279	0.22	-0.6
1,431,026	-		Rv1279	0.61	-0.4
1,431,029	+		Rv1279	0.61	-0.5
1,431,030	-		Rv1279	0.61	-0.3
1,431,030	-		Rv1279	0.61	-0.7
1,431,030	-		Rv1279	0.61	-0.5
1,431,277	+		Rv1279	0.77	+1.8
1,431,277	+		Rv1279	0.77	-0.9
1,431,299	+		Rv1279	0.78	+0.1
1,431,460	+		Rv1279	0.88	-1.1
1,431,591	+				-0.3
1,431,591	+				-0.2
1,431,592	-				-0.7
1,431,694	-				-0.4
1,431,694	-				+1.8
1,431,928	-		Rv1280c	0.15	-2.6
1,432,120	-		Rv1280c	0.26	+0.1
1,432,120	-		Rv1280c	0.26	+0.3
1,432,224	+		Rv1280c	0.31	-1.9
1,432,224	+		Rv1280c	0.31	-0.4
1,432,338	+		Rv1280c	0.38	-0.1
1,432,423	-		Rv1280c	0.43	-0.8
1,432,566	+		Rv1280c	0.51	-2.7
1,432,567	-		Rv1280c	0.51	-0.1
1,432,567	-		Rv1280c	0.51	-0.3