Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0676c and Rv0677c overlap by 4 nucleotides Rv0677c and Rv0678 are separated by 84 nucleotides Rv0678 and Rv0679c are separated by 55 nucleotides Rv0679c and Rv0680c are separated by 1 nucleotides
Rv0676c: Rv0676c - Probable conserved transmembrane transport protein MmpL5, at 775,586 to 778,480
Rv0676c
Rv0677c: Rv0677c - Possible conserved membrane protein MmpS5, at 778,477 to 778,905
Rv0677c
Rv0678: Rv0678 - Conserved protein, at 778,990 to 779,487
Rv0678
Rv0679c: Rv0679c - Conserved threonine rich protein, at 779,543 to 780,040
Rv0679c
Rv0680c: Rv0680c - Probable conserved transmembrane protein, at 780,042 to 780,416
Rv0680c
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 778.038 kb on + strand, within Rv0676c at 778.304 kb on + strand at 778.393 kb on + strand at 778.393 kb on + strand at 778.394 kb on - strand at 778.394 kb on - strand at 778.694 kb on + strand, within Rv0677c at 778.709 kb on + strand, within Rv0677c at 778.714 kb on - strand, within Rv0677c at 778.977 kb on + strand at 779.263 kb on + strand, within Rv0678 at 779.264 kb on - strand, within Rv0678 at 779.264 kb on - strand, within Rv0678 at 779.264 kb on - strand, within Rv0678 at 779.422 kb on + strand, within Rv0678 at 779.422 kb on + strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.423 kb on - strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.424 kb on + strand, within Rv0678 at 779.425 kb on - strand, within Rv0678 at 779.459 kb on - strand at 779.797 kb on - strand, within Rv0679c at 779.914 kb on + strand, within Rv0679c at 780.066 kb on + strand at 780.066 kb on + strand at 780.066 kb on + strand at 780.075 kb on + strand at 780.075 kb on + strand at 780.076 kb on - strand at 780.076 kb on - strand at 780.142 kb on + strand, within Rv0680c at 780.143 kb on - strand, within Rv0680c at 780.482 kb on + strand at 780.482 kb on + strand at 780.482 kb on + strand at 780.483 kb on - strand at 780.483 kb on - strand at 780.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 778,038 + Rv0676c 0.85 +1.6 778,304 + +0.8 778,393 + +1.3 778,393 + +0.0 778,394 - -1.4 778,394 - -0.5 778,694 + Rv0677c 0.51 -0.4 778,709 + Rv0677c 0.54 +0.0 778,714 - Rv0677c 0.55 +0.6 778,977 + -0.1 779,263 + Rv0678 0.55 -0.4 779,264 - Rv0678 0.55 -0.5 779,264 - Rv0678 0.55 -2.2 779,264 - Rv0678 0.55 +1.7 779,422 + Rv0678 0.87 +1.3 779,422 + Rv0678 0.87 -0.7 779,423 - Rv0678 0.87 -0.0 779,423 - Rv0678 0.87 -0.3 779,423 - Rv0678 0.87 +0.0 779,423 - Rv0678 0.87 +3.2 779,424 + Rv0678 0.87 -0.4 779,424 + Rv0678 0.87 +0.7 779,424 + Rv0678 0.87 +0.0 779,424 + Rv0678 0.87 -0.3 779,425 - Rv0678 0.87 -0.3 779,459 - -0.5 779,797 - Rv0679c 0.51 -1.6 779,914 + Rv0679c 0.74 -0.2 780,066 + +0.5 780,066 + -0.6 780,066 + +1.3 780,075 + -1.1 780,075 + +0.1 780,076 - +0.1 780,076 - -2.9 780,142 + Rv0680c 0.27 +1.2 780,143 - Rv0680c 0.27 +0.1 780,482 + +0.1 780,482 + +0.9 780,482 + -0.2 780,483 - +0.6 780,483 - +0.0 780,483 - +0.3
Or see this region's nucleotide sequence