Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1418

Experiment: 7H9 with Linezolid 0.44 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Linezolid 0.44 ug/mL
1,592,505	-		Rv1417	0.76	+0.3
1,592,628	-				+0.5
1,592,876	+		Rv1418	0.34	-0.3
1,592,876	+		Rv1418	0.34	-0.6
1,592,975	+		Rv1418	0.49	-0.6
1,592,976	-		Rv1418	0.49	-1.5
1,592,978	-		Rv1418	0.49	+0.3
1,592,978	-		Rv1418	0.49	-0.4
1,593,171	+		Rv1418	0.77	+1.2
1,593,171	+		Rv1418	0.77	-1.3
1,593,172	-		Rv1418	0.78	-0.6
1,593,515	+				-0.6
1,593,515	+				-0.5
1,593,516	-				+1.0
1,594,031	-				-0.1
1,594,035	+				+0.6
1,594,036	-				-0.4
1,594,036	-				-1.2
1,594,036	-				+0.8
1,594,039	+				-0.1
1,594,039	+				-1.7
1,594,039	+				+1.4
1,594,135	+				-0.5
1,594,178	-				-0.9
1,594,288	+		Rv1420	0.13	+0.2