Experiment: 7H9 with Linezolid 0.44 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0217c and Rv0218 are separated by 92 nucleotides Rv0218 and Rv0219 are separated by 1 nucleotides Rv0219 and Rv0220 are separated by 9 nucleotides
Rv0216: Rv0216 - Double hotdog hydratase, at 258,913 to 259,926
Rv0216
Rv0217c: Rv0217c - Possible esterase LipW, at 259,923 to 260,831
Rv0217c
Rv0218: Rv0218 - Probable conserved transmembrane protein, at 260,924 to 262,252
Rv0218
Rv0219: Rv0219 - Probable conserved transmembrane protein, at 262,254 to 262,802
Rv0219
Rv0220: Rv0220 - Probable esterase LipC, at 262,812 to 264,023
Rv0220
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.924 kb on + strand at 259.935 kb on - strand at 259.974 kb on - strand at 260.050 kb on - strand, within Rv0217c at 260.157 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.209 kb on + strand, within Rv0217c at 260.210 kb on - strand, within Rv0217c at 260.255 kb on - strand, within Rv0217c at 260.302 kb on + strand, within Rv0217c at 260.455 kb on + strand, within Rv0217c at 260.584 kb on - strand, within Rv0217c at 260.702 kb on + strand, within Rv0217c at 261.131 kb on + strand, within Rv0218 at 261.131 kb on + strand, within Rv0218 at 261.131 kb on + strand, within Rv0218 at 261.132 kb on - strand, within Rv0218 at 261.133 kb on + strand, within Rv0218 at 261.134 kb on - strand, within Rv0218 at 261.134 kb on - strand, within Rv0218 at 261.431 kb on + strand, within Rv0218 at 261.432 kb on - strand, within Rv0218 at 261.438 kb on - strand, within Rv0218 at 261.511 kb on + strand, within Rv0218 at 261.888 kb on + strand, within Rv0218 at 262.048 kb on + strand, within Rv0218 at 262.344 kb on + strand, within Rv0219 at 262.551 kb on + strand, within Rv0219 at 262.632 kb on + strand, within Rv0219 at 262.632 kb on + strand, within Rv0219 at 262.632 kb on + strand, within Rv0219 at 262.723 kb on - strand, within Rv0219 at 262.868 kb on - strand at 262.889 kb on + strand at 262.890 kb on - strand at 263.246 kb on - strand, within Rv0220
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Linezolid 0.44 ug/mL remove 259,924 + +1.0 259,935 - +0.9 259,974 - +0.2 260,050 - Rv0217c 0.14 -0.9 260,157 + Rv0217c 0.26 -1.4 260,209 + Rv0217c 0.31 -0.1 260,209 + Rv0217c 0.31 -0.2 260,209 + Rv0217c 0.31 -0.3 260,210 - Rv0217c 0.32 -0.2 260,255 - Rv0217c 0.37 -0.8 260,302 + Rv0217c 0.42 -0.3 260,455 + Rv0217c 0.59 +0.1 260,584 - Rv0217c 0.73 -0.4 260,702 + Rv0217c 0.86 -1.8 261,131 + Rv0218 0.16 +1.2 261,131 + Rv0218 0.16 -0.1 261,131 + Rv0218 0.16 -0.4 261,132 - Rv0218 0.16 -1.3 261,133 + Rv0218 0.16 +0.1 261,134 - Rv0218 0.16 +0.6 261,134 - Rv0218 0.16 -1.0 261,431 + Rv0218 0.38 +1.2 261,432 - Rv0218 0.38 +0.0 261,438 - Rv0218 0.39 -0.3 261,511 + Rv0218 0.44 +0.0 261,888 + Rv0218 0.73 +0.3 262,048 + Rv0218 0.85 +1.2 262,344 + Rv0219 0.16 +0.5 262,551 + Rv0219 0.54 +2.0 262,632 + Rv0219 0.69 +1.3 262,632 + Rv0219 0.69 +0.8 262,632 + Rv0219 0.69 +0.1 262,723 - Rv0219 0.85 -0.3 262,868 - -0.1 262,889 + -0.1 262,890 - +0.9 263,246 - Rv0220 0.36 -0.4
Or see this region's nucleotide sequence