Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2879c

Experiment: 7H9 with Linezolid 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Linezolid 0.3 ug/mL
3,188,612	+		Rv2877c	0.70	-1.1
3,188,612	+		Rv2877c	0.70	-0.1
3,188,612	+		Rv2877c	0.70	-0.3
3,188,621	+		Rv2877c	0.71	-0.4
3,188,621	+		Rv2877c	0.71	+0.2
3,188,622	-		Rv2877c	0.71	-0.2
3,188,768	+		Rv2877c	0.88	+4.2
3,188,769	-		Rv2877c	0.88	-0.2
3,188,769	-		Rv2877c	0.88	-0.1
3,188,769	-		Rv2877c	0.88	+0.8
3,188,970	+		Rv2878c	0.18	+0.5
3,188,970	+		Rv2878c	0.18	+0.3
3,189,003	+		Rv2878c	0.24	+0.1
3,189,003	+		Rv2878c	0.24	-0.6
3,189,305	-		Rv2878c	0.82	-1.1
3,189,338	-		Rv2878c	0.89	-0.4
3,189,428	-				-0.8
3,189,458	+				+0.2
3,189,459	-				-0.4
3,189,580	+				-0.3
3,189,646	+		Rv2879c	0.11	+0.7
3,189,848	+		Rv2879c	0.46	+1.6
3,189,856	-				-0.3
3,189,940	+				-1.2
3,189,940	+				-0.4
3,189,940	+				-0.2
3,189,941	-				+1.6
3,189,941	-				-0.1
3,189,941	-				+0.1
3,190,130	+				-1.1
3,190,130	+				-0.5
3,190,130	+				-0.6
3,190,131	-				+0.7
3,190,372	+		Rv2880c	0.63	-0.3
3,190,373	-		Rv2880c	0.63	+0.0
3,190,442	-		Rv2880c	0.71	-0.4
3,190,533	+		Rv2880c	0.82	-2.5
3,190,533	+		Rv2880c	0.82	-0.5
3,190,533	+		Rv2880c	0.82	+0.6
3,190,534	-		Rv2880c	0.82	-1.7
3,190,536	+		Rv2880c	0.83	-1.4
3,190,536	+		Rv2880c	0.83	+0.3
3,190,537	-		Rv2880c	0.83	-0.4
3,190,537	-		Rv2880c	0.83	-0.8
3,190,537	-		Rv2880c	0.83	-0.7