Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1968

Experiment: 7H9 with Linezolid 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Linezolid 0.3 ug/mL
2,210,653	+				+1.0
2,210,654	-				-0.0
2,210,721	+		Rv1967	0.12	-0.5
2,210,722	-		Rv1967	0.12	+0.1
2,210,724	+		Rv1967	0.12	-0.9
2,210,724	+		Rv1967	0.12	+0.1
2,210,725	-		Rv1967	0.12	-1.7
2,210,725	-		Rv1967	0.12	-0.4
2,211,272	-		Rv1967	0.65	-0.1
2,211,447	+		Rv1967	0.82	+1.7
2,211,447	+		Rv1967	0.82	+2.7
2,211,447	+		Rv1967	0.82	-0.3
2,211,448	-		Rv1967	0.82	-0.6
2,211,483	+		Rv1967	0.86	-0.1
2,211,483	+		Rv1967	0.86	+0.4
2,211,511	-		Rv1967	0.88	+0.0
2,211,511	-		Rv1967	0.88	-0.1
2,211,531	+				-0.2
2,211,583	-				-0.5
2,211,583	-				-0.2
2,211,713	+				+0.1
2,212,019	+		Rv1968	0.32	-0.1
2,212,124	-		Rv1968	0.40	+1.3
2,212,544	+		Rv1968	0.74	+0.2
2,212,544	+		Rv1968	0.74	+0.6
2,212,544	+		Rv1968	0.74	+0.0
2,212,545	-		Rv1968	0.75	+1.0
2,212,545	-		Rv1968	0.75	+0.0
2,213,102	-		Rv1969	0.19	-0.7
2,213,102	-		Rv1969	0.19	-0.3
2,213,216	+		Rv1969	0.28	-0.0
2,213,217	-		Rv1969	0.28	-1.1