Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1593c

Experiment: 7H9 with Linezolid 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Linezolid 0.3 ug/mL
1,793,066	+		Rv1592c	0.50	-0.3
1,793,067	-		Rv1592c	0.50	-0.2
1,793,067	-		Rv1592c	0.50	+0.1
1,793,067	-		Rv1592c	0.50	-0.0
1,793,067	-		Rv1592c	0.50	-2.2
1,793,080	-		Rv1592c	0.51	-1.1
1,793,226	+		Rv1592c	0.62	-0.1
1,793,227	-		Rv1592c	0.62	-0.2
1,793,364	+		Rv1592c	0.72	-0.2
1,793,364	+		Rv1592c	0.72	+1.2
1,793,409	+		Rv1592c	0.75	-1.3
1,793,410	-		Rv1592c	0.75	-1.5
1,793,490	+		Rv1592c	0.81	+1.6
1,793,491	-		Rv1592c	0.81	+0.3
1,793,551	+		Rv1592c	0.86	-0.9
1,793,625	+				+1.8
1,793,735	+				+0.5
1,793,741	+				+0.1
1,793,741	+				-0.1
1,793,903	+				+0.7
1,793,948	+				+0.4
1,794,045	+				+0.4
1,794,046	-				+1.2
1,794,067	+				+0.6
1,794,179	-		Rv1593c	0.26	-0.6
1,794,403	+		Rv1593c	0.57	-0.9
1,794,404	-		Rv1593c	0.57	-0.9
1,794,404	-		Rv1593c	0.57	-0.4
1,794,404	-		Rv1593c	0.57	-0.3
1,794,469	-		Rv1593c	0.66	-0.8