Experiment: 7H9 with Linezolid 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0549c and Rv0550c overlap by 4 nucleotides Rv0550c and Rv0551c are separated by 191 nucleotides Rv0551c and Rv0552 are separated by 77 nucleotides
Rv0549c: Rv0549c - Possible toxin VapC3, at 640,228 to 640,641
Rv0549c
Rv0550c: Rv0550c - Possible antitoxin VapB3, at 640,638 to 640,904
Rv0550c
Rv0551c: Rv0551c - Probable fatty-acid-CoA ligase FadD8 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 641,096 to 642,811
Rv0551c
Rv0552: Rv0552 - Conserved protein, at 642,889 to 644,493
Rv0552
Position (kb) 641
642
643 Strain fitness (log2 ratio) -1
0
1
2 at 640.178 kb on + strand at 640.179 kb on - strand at 640.179 kb on - strand at 640.436 kb on + strand, within Rv0549c at 640.437 kb on - strand, within Rv0549c at 640.576 kb on + strand, within Rv0549c at 640.837 kb on + strand, within Rv0550c at 640.838 kb on - strand, within Rv0550c at 641.049 kb on - strand at 641.049 kb on - strand at 641.162 kb on + strand at 641.163 kb on - strand at 641.463 kb on + strand, within Rv0551c at 641.463 kb on + strand, within Rv0551c at 641.463 kb on + strand, within Rv0551c at 641.464 kb on - strand, within Rv0551c at 641.466 kb on + strand, within Rv0551c at 641.466 kb on + strand, within Rv0551c at 641.467 kb on - strand, within Rv0551c at 641.467 kb on - strand, within Rv0551c at 641.712 kb on + strand, within Rv0551c at 641.712 kb on + strand, within Rv0551c at 641.748 kb on + strand, within Rv0551c at 641.821 kb on - strand, within Rv0551c at 642.045 kb on - strand, within Rv0551c at 642.239 kb on + strand, within Rv0551c at 642.239 kb on + strand, within Rv0551c at 642.397 kb on - strand, within Rv0551c at 642.556 kb on - strand, within Rv0551c at 642.565 kb on + strand, within Rv0551c at 642.779 kb on + strand at 642.779 kb on + strand at 642.823 kb on - strand at 642.823 kb on - strand at 643.342 kb on + strand, within Rv0552 at 643.411 kb on + strand, within Rv0552 at 643.411 kb on + strand, within Rv0552 at 643.487 kb on + strand, within Rv0552
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Linezolid 0.3 ug/mL remove 640,178 + -0.3 640,179 - -0.2 640,179 - -0.5 640,436 + Rv0549c 0.50 +0.7 640,437 - Rv0549c 0.50 +2.1 640,576 + Rv0549c 0.84 +1.8 640,837 + Rv0550c 0.75 +0.2 640,838 - Rv0550c 0.75 -0.1 641,049 - +0.2 641,049 - -0.1 641,162 + +0.0 641,163 - -0.4 641,463 + Rv0551c 0.21 -0.6 641,463 + Rv0551c 0.21 +1.0 641,463 + Rv0551c 0.21 +1.6 641,464 - Rv0551c 0.21 +0.8 641,466 + Rv0551c 0.22 -0.7 641,466 + Rv0551c 0.22 +0.3 641,467 - Rv0551c 0.22 -1.1 641,467 - Rv0551c 0.22 +0.6 641,712 + Rv0551c 0.36 +0.8 641,712 + Rv0551c 0.36 -1.7 641,748 + Rv0551c 0.38 +0.3 641,821 - Rv0551c 0.42 +0.5 642,045 - Rv0551c 0.55 +0.8 642,239 + Rv0551c 0.67 -0.1 642,239 + Rv0551c 0.67 -0.4 642,397 - Rv0551c 0.76 +1.0 642,556 - Rv0551c 0.85 -0.2 642,565 + Rv0551c 0.86 +0.1 642,779 + -0.5 642,779 + +0.9 642,823 - -0.4 642,823 - +1.0 643,342 + Rv0552 0.28 +1.6 643,411 + Rv0552 0.33 -0.7 643,411 + Rv0552 0.33 -0.3 643,487 + Rv0552 0.37 -0.6
Or see this region's nucleotide sequence