Experiment: 7H9 with Linezolid 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0625c and Rv0626 are separated by 131 nucleotides Rv0626 and Rv0627 overlap by 4 nucleotides Rv0627 and Rv0628c are separated by 71 nucleotides
Rv0625c: Rv0625c - Probable conserved transmembrane protein, at 717,153 to 717,893
Rv0625c
Rv0626: Rv0626 - Possible antitoxin VapB5, at 718,025 to 718,285
Rv0626
Rv0627: Rv0627 - Possible toxin VapC5, at 718,282 to 718,689
Rv0627
Rv0628c: Rv0628c - Conserved hypothetical protein, at 718,761 to 719,912
Rv0628c
Position (kb) 718
719 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 717.428 kb on - strand, within Rv0625c at 717.428 kb on - strand, within Rv0625c at 717.718 kb on + strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.802 kb on + strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 718.001 kb on + strand at 718.020 kb on + strand at 718.054 kb on + strand, within Rv0626 at 719.305 kb on + strand, within Rv0628c at 719.305 kb on + strand, within Rv0628c at 719.305 kb on + strand, within Rv0628c at 719.306 kb on - strand, within Rv0628c at 719.306 kb on - strand, within Rv0628c at 719.306 kb on - strand, within Rv0628c at 719.522 kb on - strand, within Rv0628c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Linezolid 0.3 ug/mL remove 717,428 - Rv0625c 0.37 -0.4 717,428 - Rv0625c 0.37 +2.7 717,718 + Rv0625c 0.76 -1.8 717,719 - Rv0625c 0.76 -0.1 717,719 - Rv0625c 0.76 +0.3 717,802 + Rv0625c 0.88 -0.0 717,803 - Rv0625c 0.88 -0.5 717,803 - Rv0625c 0.88 -0.5 717,813 + Rv0625c 0.89 -0.5 717,813 + Rv0625c 0.89 +4.3 718,001 + -0.2 718,020 + +0.8 718,054 + Rv0626 0.11 +0.1 719,305 + Rv0628c 0.47 -0.4 719,305 + Rv0628c 0.47 -0.2 719,305 + Rv0628c 0.47 +1.1 719,306 - Rv0628c 0.47 -0.0 719,306 - Rv0628c 0.47 +0.4 719,306 - Rv0628c 0.47 -1.8 719,522 - Rv0628c 0.66 +0.2
Or see this region's nucleotide sequence